SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene69336

Length: 257 nt

UniGene Fasta

>sp_v2.0_unigene69336
CTTGTCGCGTGTGACCTTGGCTGTGTCTCAGTAAAGGAGCTGGATTTTCTCTTGACTCTTCTTGCTGAGAAGAAGCGGAAGATGGAACAAGAGGAAGCTGAAACTAATATGGAGATACTCCTGGACTTCTTGCAACGATTGAGGCAGCAGAAACAGGCAGAGTTGAATGAGGTGCAAGCTGATCTCCATTATATCAAGGATGACATATTAGCATTGGAGAAACGAAGACTGGAATTATCTAGAGCTAGAGAACGATA

Ace file of the UniGene sp_v2.0_unigene69336

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	sp=E3 ubiquitin-protein ligase COP1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	69%
Blast2go	e3 ubiquitin-protein ligase cop1	-	-	2.77979e-28	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	2.77979e-28	82%

Source	GOs	Term	Type	e value	Identity
Blast2go	DNA repair	GO:0006281	Biological Process	2.77979e-28	82%
Blast2go	photoperiodism, flowering	GO:0048573	Biological Process	2.77979e-28	82%
Blast2go	photomorphogenesis	GO:0009640	Biological Process	2.77979e-28	82%
Blast2go	regulation of stomatal movement	GO:0010119	Biological Process	2.77979e-28	82%
Blast2go	protein ubiquitination	GO:0016567	Biological Process	2.77979e-28	82%
Blast2go	shade avoidance	GO:0009641	Biological Process	2.77979e-28	82%
Blast2go	anthocyanin metabolic process	GO:0046283	Biological Process	2.77979e-28	82%
Blast2go	identical protein binding	GO:0042802	Molecular Function	2.77979e-28	82%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	2.77979e-28	82%
Blast2go	nucleus	GO:0005634	Cellular Component	2.77979e-28	82%

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P43254

Fln msg: Distance to subject end: 462 aas, your sequence is shorter than subject: 85 - 675

Fln protein: LVACDLGCVSVKELDFLLTLLAEKKRKMEQEEAETNMEILLDFLQRLRQQKQAELNEVQADLHYIKDDILALEKRRLELSRARER

Protein Length: 86

Fln nts: CTTGTCGCGTGTGACCTTGGCTGTGTCTCAGTAAAGGAGCTGGATTTTCTCTTGACTCTTCTTGCTGAGAAGAAGCGGAAGATGGAACAAGAGGAAGCTGAAACTAATATGGAGATACTCCTGGACTTCTTGCAACGATTGAGGCAGCAGAAACAGGCAGAGTTGAATGAGGTGCAAGCTGATCTCCATTATATCAAGGATGACATATTAGCATTGGAGAAACGAAGACTGGAATTATCTAGAGCTAGAGAACGATA

Fln Alignment:

AllPineV4_c96932___ACDLGC-VSVKELDFLLTLLAEKKRKMEQEEAETNMEILLDFLQRLRQQKQAELNEVQADLHYIKDDILALEKRRLELSRARER
P43254_______________ALQRGCDVSIKEVDNLLTLLAERKRKMEQEEAERNMQILLDFLHCLRKQKVDELNEVQTDLQYIKEDINAVERHRIDLYRARDR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain