SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene69326

Length: 353 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene69326
ATTTTGTTTTTCTCGAATGACCAAGAGGAGAAAGAGCAAGCCTGCCATGGCTGGCTTTGCCATTTGGAGACAACGCTGAAAATAACATGTCTCGCTACTTCCGAGTGAAGGATATTCCAACTTTGATTATTTTAAGTCCAGATGGAAAACATACAAACTGATTTGTGGCCCTCCCTTATACTAGAATATGGAATCAGAGCTTACCCATTTACAGAAGAGCGGCTGGATGAGCTTGAAGCGGAGGATAAAGTCAAAAGAGAAGCAAAAACCCTAGAGTCACTCTTGATTTCTGATGAGCGCAACTTTATGATCAAGCATGGAAGAGCCCAGGTCCCAGTAGTTGAGCTTGTGGG

Ace file of the UniGene sp_v2.0_unigene69326 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	40%
Blast2go	probable nucleoredoxin 1	-	-	5.87911e-32	76%

Source	InterPros	Term	Type	Identity
Sma3	Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant	IPR000866	-	-
Sma3	C1-like	IPR011424	-	-
Sma3		IPR012335	-	-
Sma3		IPR017936	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKG4

Fln msg: ERROR#3, very serious frame error, warning!, putative chimeric sequence! or repetitive structureDistance to subject end: 126 aas, your sequence is shorter than subject: 117 - 586

Fln protein: FVFLE*PRGERASLPWLALPFGDNAENNMSRYFRVKDIPTLIILSPDxxxIQTDLWPSLILEYGIRAYPFTEERLDELEAEDKVKREAKTLESLLISDERNFMIKHGRAQVPVVELV

Protein Length: 118

Fln nts: ATTTTGTTTTTCTCGAATGACCAAGAGGAGAAAGAGCAAGCCTGCCATGGCTGGCTTTGCCATTTGGAGACAACGCTGAAAATAACATGTCTCGCTACTTCCGAGTGAAGGATATTCCAACTTTGATTATTTTAAGTCCAGATxxxxxxxxxATACAAACTGATTTGTGGCCCTCCCTTATACTAGAATATGGAATCAGAGCTTACCCATTTACAGAAGAGCGGCTGGATGAGCTTGAAGCGGAGGATAAAGTCAAAAGAGAAGCAAAAACCCTAGAGTCACTCTTGATTTCTGATGAGCGCAACTTTATGATCAAGCATGGAAGAGCCCAGGTCCCAGTAGTTGAGCTTGTGGG

Fln Alignment:

AllPineV4_rep_c96899___xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
B8LKG4_______________xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain