SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene69295

Length: 444 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene69295
GTTTAGTCCATTGCTGCTTATAGTCGTGGCAGTCATGAGCTCCATTATTCTGGGCGAGAAGCTTCATTTGGGAAGTGTGATGGGTTCGATTCTGATTATTGGAGGTCTATATGCGGTTGTATGGGGTAAAGCAAAGGAGATGGAAAAGGTGGTGAAGATACCAAAGAAGGATTCGGATGAGAGCTGTCACGGCCAGGACTTAATAGGCCACTGTCCGTATCCACTATCCAATGGCAAAGAGTTGATAATTAACCCGCAGCAGCAGCAACAGAATGACGGTGATCACCGTCAGGGAAAGGAATTAGCAGCTCCTAAAGCGAAAAAAAACAGTGAGAGAATCCAAAGAAATATTCTGTGTGAGGGCATTGATGAATTCTCCAGTGGAACAAGCGAGTGTCGTGAATCACTTAACCATTAATTGCTCCGGATTTGACGGAGAGACGC

Ace file of the UniGene sp_v2.0_unigene69295 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative nodulin protein [Gossypium hirsutum]	-	-	1.0e-11	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	67%
Blast2go	auxin-induced protein 5ng4-like	-	-	2.88485e-15	84%

Source	InterPros	Term	Type	e value	Identity
Sma3	Drug/metabolite transporter	IPR000620	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LM15

Fln msg: your sequence is shorter than subject: 139 - 406

Fln protein: FSPLLLIVVAVMSSIILGEKLHLGSVMGSILIIGGLYAVVWGKAKEMEKVVKIPKKDSDESCHGQDLIGHCPYPLSNGKELIINPQQQQQNDGDHRQGKELAAPKAKKNSERIQRNILCEGIDEFSSGTSECRESLNH*

Protein Length: 140

Fln nts: GTTTAGTCCATTGCTGCTTATAGTCGTGGCAGTCATGAGCTCCATTATTCTGGGCGAGAAGCTTCATTTGGGAAGTGTGATGGGTTCGATTCTGATTATTGGAGGTCTATATGCGGTTGTATGGGGTAAAGCAAAGGAGATGGAAAAGGTGGTGAAGATACCAAAGAAGGATTCGGATGAGAGCTGTCACGGCCAGGACTTAATAGGCCACTGTCCGTATCCACTATCCAATGGCAAAGAGTTGATAATTAACCCGCAGCAGCAGCAACAGAATGACGGTGATCACCGTCAGGGAAAGGAATTAGCAGCTCCTAAAGCGAAAAAAAACAGTGAGAGAATCCAAAGAAATATTCTGTGTGAGGGCATTGATGAATTCTCCAGTGGAACAAGCGAGTGTCGTGAATCACTTAACCATTAA___TTGCTCCGGATTTGACGGAGAGACGC

Fln Alignment:

AllPineV4_rep_c96826___FSPLLLIVVAVMSSIILGEKLHLGSVMGSILIIGGLYAVVWGKAKE
B8LM15_______________FSPLMMIIVAVMGSIILAETIYLGSVLGAILIVVGLYAVLWGKVKD

SSRs (tot: 1)

Start position	End position	Sequence	Length
178	189	TGC TGC TGC TGC	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain