SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene69289

Length: 387 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene69289
AAAAGTCTTGGGTTAATCCATTGTAGAGCCACAATGACTATAGCTGAAGAAAATCCCAGCTGGAAATCAGGGGAGCCAGTTTCAACTCGTTGGGTTGTGAAGGGGTGTATGGTTTTGGGCAGGGGTGCGGTATTTCTATTTCGTTAAAGCACAAAAGCAATGTATATGTTTCTCTTTTGCAGGGATGCAATAACCTTACATTCCTAAAGCAAGTCCATGCACAGATATGCTCAATTGGATTAGAACAAGACAGTTTCTGGGGATCCAAACTGATGAGGATGTATGCTATGTATAGCAATATGGAGTATGCGCACAAAATGTTTGACAGATTGCACAAACCAGATATAAACTCATGGAATCTGATGATTAGAGGGTATGCCAGGAACG

Ace file of the UniGene sp_v2.0_unigene69289 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat-containing protein, putative (Fragment) n=1 Tax=Ricinus communis RepID=B9T6U7_RICCO	-	-	9.0e-10	34%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	32%
Blast2go	pentatricopeptide repeat-containing protein	-	-	7.44761e-14	59%

Source	GOs	Term	Type	e value	Identity
Blast2go	mitochondrial mRNA modification	GO:0080156	Biological Process	7.44761e-14	59%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLJ0

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 177 aas, your sequence is shorter than subject: 128 - 644

Fln protein: KSWVNPL*SHNDYS*RKSQLEIRGASFNSLGCEGVYGFGQGCGISISLKHKSNVYVSLLQGCNNLTFLKQVHAQICSIGLEQDSFWGSKLMRMYAMYSNMEYAHKMFDRLHKPDINSWNLMIRGYARN

Protein Length: 129

Fln nts: AAAAGTCTTGGGTTAATCCATTGTAGAGCCACAATGACTATAGCTGAAGAAAATCCCAGCTGGAAATCAGGGGAGCCAGTTTCAACTCGTTGGGTTGTGAAGGGGTGTATGGTTTTGGGCAGGGGTGCGGTATTTCTATTTCGTTAAAGCACAAAAGCAATGTATATGTTTCTCTTTTGCAGGGATGCAATAACCTTACATTCCTAAAGCAAGTCCATGCACAGATATGCTCAATTGGATTAGAACAAGACAGTTTCTGGGGATCCAAACTGATGAGGATGTATGCTATGTATAGCAATATGGAGTATGCGCACAAAATGTTTGACAGATTGCACAAACCAGATATAAACTCATGGAATCTGATGATTAGAGGGTATGCCAGGAACG

Fln Alignment:

AllPineV4_rep_c96815___ISLKHKSNVYVSLLQGCNNLTFLKQ---VHAQICSIGLEQDSFWGSKLMRMYAMYSNMEYAHKMFDRLHKPDINSWNLMIRGYARN
B8LLJ0_______________VDMKPNTETFAIVLPACAALAVLEQGNEAHEVVIRSGFQSDVLVGNTLVGMYAKCGSIEDARKVFDRMRQQDSASLSAMIVGYAIN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain