SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene69280

Length: 324 nt

Origin of reads: Biogeco1 v2

UniGene Fasta

>sp_v2.0_unigene69280
ATGGGCTACGTAGACTACCCAGAGGTCTATCAAGTCTCCAGTTATAGGGTTCGTCATGGCATTTCGATATGTTTCCGTGAATGTTATATTCGTTGCATTTGCATTTGCATTCATTCAATGCACCACTGCTCAGCTCAGCCCTAATTTTTATCAGAATACATGTCCCAATGTTACCAATATAGTGGGACAGGTCATCCAGCAAGCTCTGCAAAATGATTCAAGGATTGCGGCCTCTCTCCTTCGTATGCATTTTCACGATTGCTTCGTTAATGGCTGTGATGGATCTGTTCTGTTAGATGACACAGCTAAATTTTACTGGACGAA

Ace file of the UniGene sp_v2.0_unigene69280

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Anionic peroxidase swpa5 n=1 Tax=Ipomoea batatas RepID=Q5JBR5_IPOBA	-	-	1.0e-19	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%
Blast2go	peroxidase 15-like	-	-	1.50035e-28	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Peroxidase.	EC:1.11.1.7	-	1.50035e-28	81%

Source	KEGGs	Term	e value	Identity
Blast2go	Phenylalanine metabolism	00360	1.50035e-28	81%
Blast2go	Methane metabolism	00680	1.50035e-28	81%
Blast2go	Phenylpropanoid biosynthesis	00940	1.50035e-28	81%
Blast2go	Biosynthesis of phenylpropanoids	01061	1.50035e-28	81%
Blast2go	Metabolic pathways	01100	1.50035e-28	81%
Blast2go	Biosynthesis of secondary metabolites	01110	1.50035e-28	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	defense response to bacterium	GO:0042742	Biological Process	1.50035e-28	81%
Blast2go	response to light stimulus	GO:0009416	Biological Process	1.50035e-28	81%
Blast2go	unidimensional cell growth	GO:0009826	Biological Process	1.50035e-28	81%
Blast2go	defense response to fungus	GO:0050832	Biological Process	1.50035e-28	81%
Blast2go	peroxidase activity	GO:0004601	Molecular Function	1.50035e-28	81%
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	1.50035e-28	81%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	1.50035e-28	81%
Blast2go	apoplast	GO:0048046	Cellular Component	1.50035e-28	81%
Blast2go	reactive oxygen species metabolic process	GO:0072593	Biological Process	1.50035e-28	81%

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Plant peroxidase	IPR000823	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NN21

Fln msg: Distance to subject end: 236 aas, your sequence is shorter than subject: 89 - 324

Fln protein: MAFRYVSVNVIFVAFAFAFIQCTTAQLSPNFYQNTCPNVTNIVGQVIQQALQNDSRIAASLLRMHFHDCFVNGCDGSVLLDDTAKFYWT

Protein Length: 90

Fln nts: ATGGGCTACGTAGACTACCCAGAGGTCTATCAAGTCTCCAGTTATAGGGTTCGTC_-_ATGGCATTTCGATATGTTTCCGTGAATGTTATATTCGTTGCATTTGCATTTGCATTCATTCAATGCACCACTGCTCAGCTCAGCCCTAATTTTTATCAGAATACATGTCCCAATGTTACCAATATAGTGGGACAGGTCATCCAGCAAGCTCTGCAAAATGATTCAAGGATTGCGGCCTCTCTCCTTCGTATGCATTTTCACGATTGCTTCGTTAATGGCTGTGATGGATCTGTTCTGTTAGATGACACAGCTAAATTTTACTGGACGAA

Fln Alignment:

AllPineV4_rep_c96778___MAFRYVSVNXXXXXXXXXXXQCTTAQLSPNFYQNTCPNVTNIVGQVIQQALQNDSRIAASLLRMHFHDCFVNGCDGSVLLDDTAKF
A9NN21_______________MAFAFFSLNVELCILAFVV--CSSAQLSPTFYQNTCPNVSSIVGQVLQQALQKDSRMAASLIHLFFHDCFVNGCDGSVLLSNSANF

SSRs (tot: 1)

Start position	End position	Sequence	Length
93	111	TTGCAT TTGCAT TTGCAT T	19

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain