SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene69229

Length: 410 nt

UniGene Fasta

>sp_v2.0_unigene69229
AATGTGCATGACGCTCTTTAAGTTTTAGTGTCTGCATCAGCTCATAAGGAGTTTTCTCGAAAATCAATTGTCCACTCAGTCAGCTGTATCGAGCTGTCAATGCAGAAATTATGGAGCGAATGCTTTCTATTTCGAATACAACCTTACGAATGATTGTTGTAAACGGGCAAAGCGAAAGCGAGCAAGGACACCAACACCTGGTTCTTACCTTGGCGTACGGGCTACGGTTCGGCCACGGTCCTATGGGAGACACAGAGACAACCACAGCTCACGTCGATCACCTCAGTATTCACCATATCGTGGAAGGGATTATGATAGAGATCGTTCACCTTACTACTCAGGGCCTAGTTATCGCCGGGAAAGGTCAAGGTCTCCGGAGTACTCACCTTATAGGCGATAGTGCATCCTGA

Ace file of the UniGene sp_v2.0_unigene69229

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PRP38_assoc multi-domain protein	-	-	4.0e-08	27%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%
Blast2go	unknown [Picea sitchensis]	-	-	6.69808e-08	74%

Source	InterPros	Term	Type	e value	Identity
Sma3	RNA recognition motif domain	IPR000504	-	0.0	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A7Z8

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 133 - 216

Fln protein: MCMTLFKF*CLHQLIRSFLENQLSTQSAVSSCQCRNYGANAFYFEYNLTNDCCKRAKRKRARTPTPGSYLGVRATVRPRSYGRHRDNHSSRRSPQYSPYRGRDYDRDRSPYYSGPSYRRERSRSPEYSPYRR*

Protein Length: 134

Fln nts: AATGTGCATGACGCTCTTTAAGTTTTAGTGTCTGCATCAGCTCATAAGGAGTTTTCTCGAAAATCAATTGTCCACTCAGTCAGCTGTATCGAGCTGTCAATGCAGAAATTATGGAGCGAATGCTTTCTATTTCGAATACAACCTTACGAATGATTGTTGTAAACGGGCAAAGCGAAAGCGAGCAAGGACACCAACACCTGGTTCTTACCTTGGCGTACGGGCTACGGTTCGGCCACGGTCCTATGGGAGACACAGAGACAACCACAGCTCACGTCGATCACCTCAGTATTCACCATATCGTGGAAGGGATTATGATAGAGATCGTTCACCTTACTACTCAGGGCCTAGTTATCGCCGGGAAAGGTCAAGGTCTCCGGAGTACTCACCTTATAGGCGATAG___TGCATCCTGA

Fln Alignment:

AllPineV4_rep_c96671___TPTPGSYLGVRATVRPRSYGRHRD--NHXXXXXXXXXXXXXXDYDRD
D5A7Z8_______________TPTPGSYLGVRATVRPRSYGRHRDGSSRRSPQYSPYRGSRERDYDRD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain