SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene69122

Length: 237 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene69122
CGTCGTGACCTTGGCTGTCACGTCGTGACCTTGGCTGTCACTCAGGTGGTGGAGCTATCTAAGGGAGAGGTTCTGAAAGCAGGAGTATTATTACATCCTTCATTTGTAACAGTTGATGATATTGAAGCGGTTAAAGCACCACTTGCAATACTGGGGGCGGAAAATGACAAAACCAGTCCACCTGCACTTGTACAGCAGTTTGAAGCAATTCTGTCTGCAAAACCAGAGGTAGATAGC

Ace file of the UniGene sp_v2.0_unigene69122

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	dienelactone hydrolase family protein [Arabidopsis thaliana] gb\|AEE76782.1\| dienelactone hydrolase family protein [Arabidopsis thaliana]	-	-	1.0e-17	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Blast2go	dienelactone hydrolase family protein	-	-	1.48388e-28	84%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to salt stress	GO:0009651	Biological Process	1.48388e-28	84%
Blast2go	cytoplasm	GO:0005737	Cellular Component	1.48388e-28	84%
Blast2go	apoplast	GO:0048046	Cellular Component	1.48388e-28	84%
Blast2go	nucleus	GO:0005634	Cellular Component	1.48388e-28	84%
Blast2go	plasma membrane	GO:0005886	Cellular Component	1.48388e-28	84%

Source	InterPros	Term	Type	e value	Identity
Sma3	Dienelactone hydrolase	IPR002925	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQD2

Fln msg: Distance to subject end: 43 aas, your sequence is shorter than subject: 79 - 242

Fln protein: RRDLGCHVVTLAVTQVVELSKGEVLKAGVLLHPSFVTVDDIEAVKAPLAILGAENDKTSPPALVQQFEAILSAKPEVDS

Protein Length: 80

Fln nts: CGTCGTGACCTTGGCTGTCACGTCGTGACCTTGGCTGTCACTCAGGTGGTGGAGCTATCTAAGGGAGAGGTTCTGAAAGCAGGAGTATTATTACATCCTTCATTTGTAACAGTTGATGATATTGAAGCGGTTAAAGCACCACTTGCAATACTGGGGGCGGAAAATGACAAAACCAGTCCACCTGCACTTGTACAGCAGTTTGAAGCAATTCTGTCTGCAAAACCAGAGGTAGATAGC

Fln Alignment:

AllPineV4_rep_c96419___VVELSKGEVLKAGVLLHPSFVTVDDIEAVKAPLAILGAENDKTSPPALVQQFEAILSAKPEVDS
C0PQD2_______________VVELTKGEVLKAGVLLHPSFVTVDDIKVVKAPLAILGAEIDKSSPPELVEQFGAILSAKPEVDS

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
25	33		66		0.997476
29		66	33		0.997476
32			33	66	0.997453
35		66	33		0.997453
36	33			66	0.997454
38		33		66	0.997471
41	33	66			0.997471

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain