SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene69011

Length: 469 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene69011
CGTCGTGACCTTGGCTGTCACTCATTTACTGAAGGGATTGTTTTAGGACATCATATTTCTGGGGATGGGATTAAAGTTGATAGATCAAAAGTTGAAGTCATCTCCAAGTTGCCTATTCCAAATTGTCAAAGAGATGTTAGAATTTTTCTTGGATTTACTGGATATTATAGAAGATTTATTGAAAACTTCACCAAGATAGCATCTCCGCTCTTCAAATTACTTACAAAAGACTGTGAATTCAAATGGGATCCTGACTGTCAATCTGCATTTGAAACTTTGAAAACAAGAATATCTGAAGCACCCATTTTGAGATGGCCAAATTGGAAACTTCCTTTCCATATTTCTACAGATGCTTCAGATACAGCTCTAGGGGTTGTATTGGGACAAAAGGATTTGGTCCCTTATGCCATTTACTACACCAGTAAAAATTTGACTCCCACCGAGTTGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene sp_v2.0_unigene69011

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	NXRV091_F10_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA clone NXRV091_F10 5' similar to Arabidopsis thaliana sequence At1g37060 Athila retroelment ORF 1, putative see http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence.	-	-	0.0	89%
FL-Next	sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion.	-	-	0.0	43%
Blast2go	uncharacterized protein loc100855032	-	-	5.88545e-44	70%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Carlavirus nucleic acid-binding protein	IPR002568	-	-
Sma3	KID repeat	IPR003900	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Zinc finger, PMZ-type	IPR006564	-	-
Sma3	Zinc finger, SWIM-type	IPR007527	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	DNA methylase, N-4 cytosine-specific, conserved site	IPR017985	-	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	-
Sma3	Ribosomal protein L33, conserved site	IPR018264	-	-
Sma3	MULE transposase domain	IPR018289	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: P92523

Fln msg: STOP codon was not found. Distance to subject end: 17 aas,

Fln protein: RRDLGCHSFTEGIVLGHHISGDGIKVDRSKVEVISKLPIPNCQRDVRIFLGFTGYYRRFIENFTKIASPLFKLLTKDCEFKWDPDCQSAFETLKTRISEAPILRWPNWKLPFHISTDASDTALGVVLGQKDLVPYAIYYTSKNLTPTELSDSQGHD

Protein Length: 157

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTACTGAAGGGATTGTTTTAGGACATCATATTTCTGGGGATGGGATTAAAGTTGATAGATCAAAAGTTGAAGTCATCTCCAAGTTGCCTATTCCAAATTGTCAAAGAGATGTTAGAATTTTTCTTGGATTTACTGGATATTATAGAAGATTTATTGAAAACTTCACCAAGATAGCATCTCCGCTCTTCAAATTACTTACAAAAGACTGTGAATTCAAATGGGATCCTGACTGTCAATCTGCATTTGAAACTTTGAAAACAAGAATATCTGAAGCACCCATTTTGAGATGGCCAAATTGGAAACTTCCTTTCCATATTTCTACAGATGCTTCAGATACAGCTCTAGGGGTTGTATTGGGACAAAAGGATTTGGTCCCTTATGCCATTTACTACACCAGTAAAAATTTGACTCCCACCGAGTTGAGTGACAGCCAAGGTCACGACG

Fln Alignment:

AllPineV4_c96159___HHISGDGIKVDRSKVEVISKLPIPNCQRDVRIFLGFTGYYRRFIENFTKIASPLFKLLTKDCEFKWDPDCQSAFETLKTRISEAPILRWPNWKLPF
P92523_______________HIISGEGVSADPAKLEAMVGWPEPKNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKN-SLKWTEMAALAFKALKGAVTTLPVLALPDLKLPF

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
155	66		33		0.997453
160		66		33	0.997453
164	66		33		0.997461
194		66		33	0.997452
197	33		66		0.997452
205	33	66			0.997452
207		66		33	0.997452
209			66	33	0.997452
230	66			33	0.997476
233		66		33	0.997452
245	66			33	0.997471
263	66			33	0.997452
267	33		66		0.997452
270		33		66	0.997476
276	66		33		0.997476
284	66		33		0.997452
290	66		33		0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain