SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene68940

Length: 430 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene68940
CGTCGTGACCTTGGCTGTCACTCCGTCGTGACCTTGGCTGTCACTGAATTGTAACCGGTTGACACATGTACCTCCTGGAATAGGATTGTTAACTTGTCTGAAGCAGCTCAATCTTTCACACAATAATATAGTCCACTTGCCAGAGGAGATTGGACAACTAAGACAACTTGAAATTTTATGGATGAATAATAACCGCTTGAGAACATTGCCTTCAACTGTAGGAGATTGTTGCTCTCTACTTGAGGCTGATTTCTCTTCGAACCTTTTGGGAGAATTGCCAAGTACTTTGGGAAACCTAGCAAATATAAAGGTTGAAGGCTGGTCGGAGTATGATGAGCGTAGGAGATCCAAGAACAATAAGCAAATAGAGTTCGGTGTCATGAGTTCAAGTGGGTTTGATGAAGGGGCTGATTCACAGCATTGGGACCGT

Ace file of the UniGene sp_v2.0_unigene68940

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	leucine-rich repeat-containing protein [Arabidopsis thaliana] gb\|AAM13067.1\| unknown protein [Arabidopsis thaliana] gb\|AAM91174.1\| unknown protein [Arabidopsis thaliana] gb\|AED91220.1\| leucine-rich repeat-containing protein [Arabidopsis thaliana]	-	-	4.0e-17	33%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	40%
Blast2go	lrr repeats and ubiquitin-like domain-containing protein at2g30105-like	-	-	7.5833e-37	55%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ubiquitin	IPR000626	-	0.0	-
Sma3	Leucine-rich repeat	IPR001611	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLA8

Fln msg: Distance to subject end: 472 aas, your sequence is shorter than subject: 143 - 914

Fln protein: VVTLAVTPS*PWLSLNCNRLTHVPPGIGLLTCLKQLNLSHNNIVHLPEEIGQLRQLEILWMNNNRLRTLPSTVGDCCSLLEADFSSNLLGELPSTLGNLANIKVEGWSEYDERRRSKNNKQIEFGVMSSSGFDEGADSQHWDR

Protein Length: 144

Fln nts: CGTCGTGACCTTGGCTGTCACTCCGTCGTGACCTTGGCTGTCACTGAATTGTAACCGGTTGACACATGTACCTCCTGGAATAGGATTGTTAACTTGTCTGAAGCAGCTCAATCTTTCACACAATAATATAGTCCACTTGCCAGAGGAGATTGGACAACTAAGACAACTTGAAATTTTATGGATGAATAATAACCGCTTGAGAACATTGCCTTCAACTGTAGGAGATTGTTGCTCTCTACTTGAGGCTGATTTCTCTTCGAACCTTTTGGGAGAATTGCCAAGTACTTTGGGAAACCTAGCAAATATAAAGGTTGAAGGCTGGTCGGAGTATGATGAGCGTAGGAGATCCAAGAACAATAAGCAAATAGAGTTCGGTGTCATGAGTTCAAGTGGGTTTGATGAAGGGGCTGATTCACAGCATTGGGACCGT

Fln Alignment:

AllPineV4_rep_c95979___TLAVTPS*PWLSLNCNRLT-HVPPGIGLLTCLKQLNLSHNNIVH-LPEEIGQLRQLEILWMNNNRL-RTLPSTVGDCCSLLEADFSSN-LLGELPSTLGNLANIK
B8LLA8_______________TLGKCISLSYIGLYRNSLSGHMPRTLGNLTQISQIDLSYNNLSGAIPVDLGSLQKLEDLDLSYNALDNIIPPSLGNCSSLLSLSFSSNRLSGSIPHQLGNLRNIR

SNPs (tot: 3)

Position	A %	C %	T %	Probability
24	33	66		0.997476
33	33	66		0.997476
34	33		66	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain