SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene68939

Length: 285 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene68939
CGTCGTGACCTTGGCTGTCACTCAAGTGCAAGAATTTCACATGTCTAGCAAACAATAGGACTCGTAAAGGATTTTTCAAATGTTCTGAATGCTTTAACCTTACTAGTCATGAATTTCCCAGATGGATGCAAGTGCAAAACTCTTCCAACAATCCAGATTTTCTTATTGCTGATGTTCTGAGCATTAAACCTGGGGAGATACGTATTGGGTTGGATTTCAGTATCGGAACTGGGACATTTGCAGCTAGAATGAGAGAGTTTGATGTAACAATTATTCAGCTACTAT

Ace file of the UniGene sp_v2.0_unigene68939

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative methyltransferase domain-containing protein [Arabidopsis thaliana] emb\|CAB80933.1\| hypothetical protein [Arabidopsis thaliana] gb\|AEE81998.1\| putative methyltransferase domain-containing protein [Arabidopsis thaliana]	-	-	8.0e-28	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	47%
Blast2go	protein	-	-	1.6372e-37	76%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Pancreatic hormone-like	IPR001955	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LPA4

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 126 aas, your sequence is shorter than subject: 94 - 448

Fln protein: S*PWLSLKCKNFTCLANNRTRKGFFKCSECFNLTSHEFPRWMQVQNSSNNPDFLIADVLSIKPGEIRIGLDFSIGTGTFAARMREFDVTIIQLL

Protein Length: 95

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGTGCAAGAATTTCACATGTCTAGCAAACAATAGGACTCGTAAAGGATTTTTCAAATGTTCTGAATGCTTTAACCTTACTAGTCATGAATTTCCCAGATGGATGCAAGTGCAAAACTCTTCCAACAATCCAGATTTTCTTATTGCTGATGTTCTGAGCATTAAACCTGGGGAGATACGTATTGGGTTGGATTTCAGTATCGGAACTGGGACATTTGCAGCTAGAATGAGAGAGTTTGATGTAACAATTATTCAGCTACTAT

Fln Alignment:

AllPineV4_rep_c95977___WLSLKCKNFTCLANNRTRKGFFKCSECFNLTSHEFPRWMQVQNSSNNPDFLIADVLSIKPGEIRIGLDFSIGTGTFAARMREFDVTII
B8LPA4_______________WTAYSCKNYSCLIQRKYLKVFDDCKDCFDLQGREKTRWLNGVGS--DIDYSIDEVLKIKRHTIRIGLDIGGGTGTFAVRMRERNVTII

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain