SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene68925

Length: 466 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene68925
CGTCGTGACCTTGGCTGTCACTCATTTGGCAGCTCTGGAACAGGGCATGGAAATCCATGAAGAAATAATTAGAAGTGGTTTTCAATGCAATGTATTTCTGTGTAACGCGCTTCTGGACATGTATGCAAAATGTGGAAGCATAGACAAGGCAAACGAAGTTTTCGACAAAATACATGGAAAAGATGTGGTTTCATGGAATTCAATGATTGCAGGATATGCAATGCATGGATGTGGCAAGGAAGCCCTGAAACTATTTCAAGAAATGCAACAATCTGGTATGAAACCGGACAGTGTTACTTTCATCAATGTGTTGTCGGCATGCTGTCATGCAGGCCTAGTGGATGAGGGCCGAAAGTACTTTAATTCTATGAGTCAATGTTACCAGATCACACCCGTGATAGAACACTATGGCTGCACGGCTGACCTTGGCCGTGCTGGGCACCTGGAAGAGGTTAAAGAGACTTGA

Ace file of the UniGene sp_v2.0_unigene68925

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|Q9LUS3.1\|PP237_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g16610 dbj\|BAB02752.1\| selenium-binding protein-like [Arabidopsis thaliana] gb\|AEE75843.1\| pentatricope	-	-	2.0e-40	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	59%
Blast2go	pentatricopeptide repeat-containing protein	-	-	0.0	73%

Source	InterPros	Term	Type	Identity
Sma3	Ribonuclease P	IPR000100	-	-
Sma3	Oligopeptide transporter	IPR000109	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Plant lipid transfer protein/Par allergen	IPR000528	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Diacylglycerol kinase, accessory domain	IPR000756	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Diacylglycerol kinase, catalytic domain	IPR001206	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3		IPR003612	-	-
Sma3	Putative methylase	IPR004557	-	-
Sma3	Methyltransferase small	IPR007848	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Plant lipid transfer protein/hydrophobic protein helical domain	IPR013770	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3		IPR017442	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5AB53

Fln msg: W2: There is no M at the beginning, your sequence is shorter than subject: 155 - 232

Fln protein: VVTLAVTHLAALEQGMEIHEEIIRSGFQCNVFLCNALLDMYAKCGSIDKANEVFDKIHGKDVVSWNSMIAGYAMHGCGKEALKLFQEMQQSGMKPDSVTFINVLSACCHAGLVDEGRKYFNSMSQCYQITPVIEHYGCTADLGRAGHLEEVKET*

Protein Length: 156

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTGGCAGCTCTGGAACAGGGCATGGAAATCCATGAAGAAATAATTAGAAGTGGTTTTCAATGCAATGTATTTCTGTGTAACGCGCTTCTGGACATGTATGCAAAATGTGGAAGCATAGACAAGGCAAACGAAGTTTTCGACAAAATACATGGAAAAGATGTGGTTTCATGGAATTCAATGATTGCAGGATATGCAATGCATGGATGTGGCAAGGAAGCCCTGAAACTATTTCAAGAAATGCAACAATCTGGTATGAAACCGGACAGTGTTACTTTCATCAATGTGTTGTCGGCATGCTGTCATGCAGGCCTAGTGGATGAGGGCCGAAAGTACTTTAATTCTATGAGTCAATGTTACCAGATCACACCCGTGATAGAACACTATGGCTGCACGGCTGACCTTGGCCGTGCTGGGCACCTGGAAGAGGTTAAAGAGACTTGA___

Fln Alignment:

AllPineV4_rep_c95948___AVTHLAALEQGMEIHEEIIRSGFQCNVFLCNALLDMYAKCGSIDKANEVFDKIHGKDVVSWNSMIAGYAMHGCGKEALKLFQEMQQSGMKPDSVTFINVLSACCHAGLVDEGRKYFNSMSQCYQITPVIEHYGCTAD-LGRAGHLEEVKE
D5AB53_______________ACANLAALEPGKVLHLYIIKSGFESDVFVGSTLIDMYAKCSSIGDASKVFDGMSTRNVVSWNAMIAAYAIHGCGKQALDLFEQMKHSDTSPNQVTFVGVLSACCHAGLVSEGRQYFNSMSVDYHITPVMEHYCCMVDLLGRTGCLDEAHD

SNPs (tot: 4)

Position	C %	G %	T %	Probability
102		66	33	0.997471
133	33		66	0.997476
154	66		33	0.997476
192	66		33	0.997454

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain