SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene68470

Length: 493 nt

Origin of reads: Biogeco1 v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene68470
CTCTGCAATTTGGATTCACAAATGGATATTCATCACCTACTCAGGATGCCATCACAAGCAGTCTCAGCCTGTCAGTCTCTCAGTTCTCTCTATTTGGTTCACTATCCAACGTTGGTGCAATGGTTGGAGCAATAGTCAGTGGGCAGATTGCCGATTACATTGGGCGGAAAGGGGCACTAGTGGTTGCAGCAATGCCAAATATTGCAGGGTGGCTCATCATTGCTTTTGCAAAGAATGCTTCATTCTTATATGCAGGTAGAATGTTGACAGGCTTTGGGGTGGGAGTCATATCATTCACAGTACCGGTATATATAGCTGAGATAGCTCCAAAGCACTTACGGGGTTCTCTTGGAACTCTGAATCAGCTTTCAGTTACTGTTGGTATCATGCTGGCATATCTATTTGGGTTGTTTGTTTCATGGAGACTTCTCGCAATTTTAGGAGTAGTACCCTGTGCTCTGTTGATTATTGGTCTCTTCTTCATCCCAGAATC

Ace file of the UniGene sp_v2.0_unigene68470 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Sugar transporter, putative n=1 Tax=Ricinus communis RepID=B9R7V2_RICCO	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	integral membrane protein	-	-	91%

Source	GOs	Term	Type	e value	Identity
Blast2go	substrate-specific transmembrane transporter activity	GO:0022891	Molecular Function	0.0	91%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	0.0	91%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase M14, carboxypeptidase A	IPR000834	-	-
Sma3	Sugar/inositol transporter	IPR003663	-	-
Sma3	General substrate transporter	IPR005828	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Twin-arginine translocation pathway, signal sequence	IPR006311	-	-
Sma3	Major facilitator superfamily	IPR011701	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLK8

Fln msg: Distance to subject end: 265 aas, your sequence is shorter than subject: 163 - 502

Fln protein: LQFGFTNGYSSPTQDAITSSLSLSVSQFSLFGSLSNVGAMVGAIVSGQIADYIGRKGALVVAAMPNIAGWLIIAFAKNASFLYAGRMLTGFGVGVISFTVPVYIAEIAPKHLRGSLGTLNQLSVTVGIMLAYLFGLFVSWRLLAILGVVPCALLIIGLFFIPE

Protein Length: 164

Fln nts: CTCTGCAATTTGGATTCACAAATGGATATTCATCACCTACTCAGGATGCCATCACAAGCAGTCTCAGCCTGTCAGTCTCTCAGTTCTCTCTATTTGGTTCACTATCCAACGTTGGTGCAATGGTTGGAGCAATAGTCAGTGGGCAGATTGCCGATTACATTGGGCGGAAAGGGGCACTAGTGGTTGCAGCAATGCCAAATATTGCAGGGTGGCTCATCATTGCTTTTGCAAAGAATGCTTCATTCTTATATGCAGGTAGAATGTTGACAGGCTTTGGGGTGGGAGTCATATCATTCACAGTACCGGTATATATAGCTGAGATAGCTCCAAAGCACTTACGGGGTTCTCTTGGAACTCTGAATCAGCTTTCAGTTACTGTTGGTATCATGCTGGCATATCTATTTGGGTTGTTTGTTTCATGGAGACTTCTCGCAATTTTAGGAGTAGTACCCTGTGCTCTGTTGATTATTGGTCTCTTCTTCATCCCAGAATC

Fln Alignment:

AllPineV4_rep_c94832___LQFGFTNGYSSPTQDAITXXXXXXXXXXXXXXXXSNVGAMVGAIVSGQIADYIGRKGALVVAAMPNIAGWLIIAFAKNASFLYAGRMLTGFGVGVISFTVPVYIAEIAPKHLRGSLGTLNQLSVTVGIMLAYLFGLFVSWRLLAILGVVPCALLIIGLFFIPE
B8LLK8_______________LQFGFTNGYSSPTQDGITSSLSLTVSQFSLFGSISNVGAMVGAIVSGQIADYIGRKGALIVAAIPNIAGWLIIAFAKNAAFLYAGRLLTGFGVGVISFTVPVYIAEIAPKHLRGSLGTVNQLSVTVGIMLAYLFGLFVSWRLLAILGVVPCALLIIGLFVIPE

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
212	25	75			0.996476
309	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain