SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene68459

Length: 516 nt

UniGene Fasta

>sp_v2.0_unigene68459
CTTAGCGTGTGTGTTGGTTGTCACTCTGCAACCAAGTTCATCACAAAGATTGTTGACAGAGTAATTGTTGTGAGGGATTCCAAACGTTTCCATCATTTTAAACGTGGGCAGTGCTCTTGTGGGGATTATTGGTAACTAAGTGGAACAAACAATGGACATGGCCATTCGCACCTTTCCTACTTTGTATTGAATTTCGGGGGTGGTAATAGATATTCCATCTCCCGCTGTAAACAATGGTTGGGGATATTAGTGAAAGAAGGAATTGAGGATCCAGATGCTCTTTACAACATATTTATAATGGAGAATCAAGGGACAAAGGGTCCAATTGCATCCCCTATAAATGCCATTGGCTTGAAATTGGTTAGTGAAAGTGATCACTTGTTTGGCTCACAACCAAGAAGACACGAGCCAATAATGAAAGAGTGAGTTGGTGTTAGACATCAGATCTCTCAGCTCATCAATTCTCTAGTTCCTATCTTCTGAAACACTCTCAGCTTTATTAATACGTTTCCATCA

Ace file of the UniGene sp_v2.0_unigene68459

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%
Blast2go	pentatricopeptide repeat-containing protein	-	-	7.37446e-17	83%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	MAP kinase, conserved site	IPR003527	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	Domain of unknown function DUF659	IPR007021	-	-
Sma3	2,3-diketo-5-methylthio-1-phosphopentane phosphatase	IPR010041	-	-
Sma3		IPR011523	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Methyltransferase type 11	IPR013216	-	-
Sma3		IPR017442	-	-
Sma3		IPR018115	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAH8

Fln msg: your sequence is shorter than subject: 45 - 210

Fln protein: LSVCVGCHSATKFITKIVDRVIVVRDSKRFHHFKRGQCSCGDYW*

Protein Length: 46

Fln nts: CTTAGCGTGTGTGTTGGTTGTCACTCTGCAACCAAGTTCATCACAAAGATTGTTGACAGAGTAATTGTTGTGAGGGATTCCAAACGTTTCCATCATTTTAAACGTGGGCAGTGCTCTTGTGGGGATTATTGGTAA___CTAAGTGGAACAAACAATGGACATGGCCATTCGCACCTTTCCTACTTTGTATTGAATTTCGGGGGTGGTAATAGATATTCCATCTCCCGCTGTAAACAATGGTTGGGGATATTAGTGAAAGAAGGAATTGAGGATCCAGATGCTCTTTACAACATATTTATAATGGAGAATCAAGGGACAAAGGGTCCAATTGCATCCCCTATAAATGCCATTGGCTTGAAATTGGTTAGTGAAAGTGATCACTTGTTTGGCTCACAACCAAGAAGACACGAGCCAATAATGAAAGAGTGAGTTGGTGTTAGACATCAGATCTCTCAGCTCATCAATTCTCTAGTTCCTATCTTCTGAAACACTCTCAGCTTTATTAATACGTTTCCATCA

Fln Alignment:

AllPineV4_rep_c94795___LSVCVGCHSATKFITKIVDRVIVVRDSKRFHHFKRGQCSCGDYW
D5AAH8_______________LRVCVDCHTATKFISKIAGREIVVRDANRFHHFKDGLCSCGDYW

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
153	66		33		0.997457
154	66			33	0.997457
155		33		66	0.997457
161	66	33			0.997457
198		66		33	0.997467
220	75		25		0.996478
231		66	33		0.997452
237	66	33			0.997452
239	33	33	33		0.997753
240		66		33	0.997452
241	66	33			0.997452
276			66	33	0.997452
283	66			33	0.997452
319			66	33	0.997452
377	66		33		0.997452
380	33		66		0.997452
390			75	25	0.996479
391			25	75	0.996477

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain