SustainPineDB

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Assembly info
Unigenes
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene68432

Length: 371 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene68432
GTACATGATTAATAATAATCAGCTGTTGGTTGTATTTTCTACACTTCTTCAGACAGCTAAGGTTGTAAGATACGTCGCGACCTGCCTGTAAATCATCTTGTTAGTACCAAATTGGATGTCCTTAAACAACCGGACACACCTGCATCAAAACTAGTTCTGCAATTGTTCCGTGCTTTATTTGTTGCTGTCGCAAAATCTCCTGGGGATTGTGAGCGAGTGTTACAGCCATATGTATCAACTATAATGGAAGTATGTATGAAGAATGCTACTGAGATAGAAAAGCCTCATGGATTCATGCAACTGCTCCGAACTATGTTTCGTGCTCTTTCTGGAGCGAAGTTTGAACTGTTGTTAAGGGGAGTTTATCCCAT

Ace file of the UniGene sp_v2.0_unigene68432 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[TDBLU] COG5032 Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family	-	-	5.0e-09	36%
FL-Next	tr=Predicted protein; Physcomitrella patens subsp. patens (Moss).	-	-	0.0	76%
Blast2go	transformation transcription domain-associated protein	-	-	1.62622e-39	83%

Source	GOs	Term	Type	e value	Identity
Blast2go	transferase activity	GO:0016740	Molecular Function	1.62622e-39	83%

Source	InterPros	Term	Type	Identity
Sma3	Phosphatidylinositol 3-/4-kinase, catalytic domain	IPR000403	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Phosphotransferase system, HPr serine phosphorylation site	IPR002114	-	-
Sma3	PIK-related kinase, FAT	IPR003151	-	-
Sma3	PIK-related kinase, FATC	IPR003152	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	PIK-related kinase	IPR014009	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A9SCG8

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 3165 aas, your sequence is shorter than subject: 123 - 3825

Fln protein: VHD***SAVGCIFYTSSDS*GCKIRRDLPVNHLVSTKLDVLKQPDTPASKLVLQLFRALFVAVAKSPGDCERVLQPYVSTIMEVCMKNATEIEKPHGFMQLLRTMFRALSGAKFELLLRGVYP

Protein Length: 124

Fln nts: GTACATGATTAATAATAATCAGCTGTTGGTTGTATTTTCTACACTTCTTCAGACAGCTAAGGTTGTAAGATACGTCGCGACCTGCCTGTAAATCATCTTGTTAGTACCAAATTGGATGTCCTTAAACAACCGGACACACCTGCATCAAAACTAGTTCTGCAATTGTTCCGTGCTTTATTTGTTGCTGTCGCAAAATCTCCTGGGGATTGTGAGCGAGTGTTACAGCCATATGTATCAACTATAATGGAAGTATGTATGAAGAATGCTACTGAGATAGAAAAGCCTCATGGATTCATGCAACTGCTCCGAACTATGTTTCGTGCTCTTTCTGGAGCGAAGTTTGAACTGTTGTTAAGGGGAGTTTATCCCAT

Fln Alignment:

AllPineV4_c94724___DLPVNHLVSTKLDVLKQPDTPASKLVLQLFRALFVAVAKSPGDCERVLQPYVSTIMEVCMKNATEIEKPHGFMQLLRTMFRALSGAKFELLLRGVYP
A9SCG8_______________DVLVNYLVTSKLDTLKQPDTPAAKLVLQLFRYLFVAVAKFSADCERVLQPHVITLMESCMKNATEVEKPLGYMQLLRTMFRALSGGKFELLFREFIP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain