SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene68393

Length: 343 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene68393
CGTCGTGACCTTGGCTGTCACTCAGTTTTTTATTTCGATAATTTACTTGGGTTTTATTAACATGTTCCTAATTACTGATCACATATCTCTGTACCAACGCAGGTTCGTTTCGAAGGGCACTCGTCTGAGTAGAAAGAAGAGTTTGCCCATATTTATTTACTGTTTGATCGTGTTGTGACTGCTGATCTTAATATGGGTTCTTTACGAGGTGAGGAACGATTAGAGTATCCAGAAGTGAGGAGGGATGAGTCTGTGGTGGACAATTATCATGGGGTGCTTGTACATGATCCTTATCGATGGCTGGAAGACCCTGATTCAAAGGAGTCAAGGATTTTGTGAGAAG

Ace file of the UniGene sp_v2.0_unigene68393

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	prolyl oligopeptidase-like protein [Arabidopsis thaliana] gb\|AEE29967.1\| prolyl oligopeptidase-like protein [Arabidopsis thaliana]	-	-	2.0e-11	73%
FL-Next	tr=Prolyl oligopeptidase-like protein; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	73%
Blast2go	prolyl endopeptidase	-	-	7.55715e-13	82%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S9, prolyl oligopeptidase, catalytic domain	IPR001375	-	-
Sma3	Peptidase S9A, prolyl oligopeptidase	IPR002470	-	-
Sma3	Peptidase S9, serine active site	IPR002471	-	-
Sma3	Peptidase S9A/B/C, oligopeptidase, N-terminal beta-propeller	IPR004106	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: F4HSS5

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 680 aas, your sequence is shorter than subject: 49 - 731

Fln protein: MGSLRGEERLEYPEVRRDESVVDNYHGVLVHDPYRWLEDPDSKESRIL*

Protein Length: 50

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTTTTTATTTCGATAATTTACTTGGGTTTTATTAACATGTTCCTAATTACTGATCACATATCTCTGTACCAACGCAGGTTCGTTTCGAAGGGCACTCGTCTGAGTAGAAAGAAGAGTTTGCCCATATTTATTTACTGTTTGATCGTGTTGTGACTGCTGATCTTAAT_-_ATGGGTTCTTTACGAGGTGAGGAACGATTAGAGTATCCAGAAGTGAGGAGGGATGAGTCTGTGGTGGACAATTATCATGGGGTGCTTGTACATGATCCTTATCGATGGCTGGAAGACCCTGATTCAAAGGAGTCAAGGATTTTGTGAGAAG

Fln Alignment:

AllPineV4_rep_c94627___MGSLRG-EERLEYPEVRRDESVVDNYHGVLVHDPYRWLEDPDSKE
F4HSS5_______________MGSLPAFEERLQYPTARRDESVVEDYHGVKVSDPYRWLEDPDAEE

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
122	33	66			0.997461

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain