SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene68208

Length: 387 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene68208
CGTCGTGACCTTGGCTGTCACTCAATCTCCTTTATCACCTTGAGGCTCGTACGGTGTACCTCTGTTGGGATCCATGCTTGCGAAGATCTATCACAATCCTCAAAAAGATGCAAACCGATCTCGTTTGCAAAAGATATTACCGTTTTGGGCTTTCAATGAAGCTTATAACAATGAAACTATGTATAGTTTAGCTGGAGCTGGATTGGCAAAAATAATCCTCCATGTAACAGCCATCTATTGGTCTAATACTATAATAGGTATTTCTTTTGATTGTAGCAACTTGTTGCATATTTTGTTTTCCATTGATATATAATTGTACACTTAGCTTGCCTCTGGTTAGGGAATTCCATAAGCTTTCACTCAAAAACCTCTTTAATGGTCATCAGT

Ace file of the UniGene sp_v2.0_unigene68208

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	65%
Blast2go	swap surp domain-containing protein	-	-	2.69929e-11	80%

Source	InterPros	Term	Type	Identity
Sma3	SWAP/Surp	IPR000061	-	-
Sma3	RNA polymerase II, large subunit, CTD	IPR006569	-	-
Sma3	RNA polymerase II-binding domain	IPR006903	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5AVH3

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 207 aas, your sequence is shorter than subject: 104 - 646

Fln protein: VVTLAVTQSPLSP*GSYGVPLLGSMLAKIYHNPQKDANRSRLQKILPFWAFNEAYNNETMYSLAGAGLAKIILHVTAIYWSNTIIGISFDCSNLLHILFSIDI*

Protein Length: 105

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCTCCTTTATCACCTTGAGGCTCGTACGGTGTACCTCTGTTGGGATCCATGCTTGCGAAGATCTATCACAATCCTCAAAAAGATGCAAACCGATCTCGTTTGCAAAAGATATTACCGTTTTGGGCTTTCAATGAAGCTTATAACAATGAAACTATGTATAGTTTAGCTGGAGCTGGATTGGCAAAAATAATCCTCCATGTAACAGCCATCTATTGGTCTAATACTATAATAGGTATTTCTTTTGATTGTAGCAACTTGTTGCATATTTTGTTTTCCATTGATATATAATTGTACACTTAGCTTGCCTCTGGTTAGGGAATTCCATAAGCTTTCACTCAAAAACCTCTTTAATGGTCATCAGT

Fln Alignment:

AllPineV4_rep_c94176___PLLGSMLAKIYHNPQ-KDANRSRLQKILPFWAFNEAYNNETMYSLAG
A5AVH3_______________PVLGSMLARIYHNPQNKEENQSRLQKILQFWASKEVYDHDTIYGLEG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain