SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene68183

Length: 318 nt

Origin of reads: Biogeco1 v2

UniGene Fasta

>sp_v2.0_unigene68183
AGAGAGTGCAGACACTTCAATATTGTCTGATGAAGCAGAAAATCAGGAAAATTGTGGACAGGCAACTCAGAGACATGAAAGTGGTGGAAGCTCTGGCAAAAGAAGGCGGAGCGAATGTGATCCTATGCCTGAGGAGGGAGAAGCAGGAAATGAAGGGGAATGTGGTGGTAAGAAGAAGAGGTCAAGATGCGCTGGAGAAGAACAAAAGATTTCAATGTTAGGGGAAATAAAACTTCCAGATTATATGAAGGAGTTAACTGATGCAGATCCTGAAGTGCGGGAACTAAGATTTAAGCTTTTTAATATAAACAAGAGACT

Ace file of the UniGene sp_v2.0_unigene68183

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	55%
Blast2go	unknown [Picea sitchensis]	-	-	2.18334e-18	74%

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	K Homology domain	IPR004087	-	-
Sma3	K Homology domain, type 1	IPR004088	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LRH8

Fln msg: Distance to subject end: 762 aas, your sequence is shorter than subject: 105 - 970

Fln protein: ESADTSILSDEAENQENCGQATQRHESGGSSGKRRRSECDPMPEEGEAGNEGECGGKKKRSRCAGEEQKISMLGEIKLPDYMKELTDADPEVRELRFKLFNINKR

Protein Length: 106

Fln nts: AGAGAGTGCAGACACTTCAATATTGTCTGATGAAGCAGAAAATCAGGAAAATTGTGGACAGGCAACTCAGAGACATGAAAGTGGTGGAAGCTCTGGCAAAAGAAGGCGGAGCGAATGTGATCCTATGCCTGAGGAGGGAGAAGCAGGAAATGAAGGGGAATGTGGTGGTAAGAAGAAGAGGTCAAGATGCGCTGGAGAAGAACAAAAGATTTCAATGTTAGGGGAAATAAAACTTCCAGATTATATGAAGGAGTTAACTGATGCAGATCCTGAAGTGCGGGAACTAAGATTTAAGCTTTTTAATATAAACAAGAGACT

Fln Alignment:

AllPineV4_c94089___ESADTSILSDEAENQENCGQATQRHEXXXXXXXXXXXECDPMPXXXXXXXXXXXXXKKKRSRCAGEEQKISMLGEIKLPDY------------------------------MKELTDADPEVRELRFKLFNINKR
B8LRH8_______________ESAGASKLSEEAANQQNCGQATQRHESGGSSGKKRRSRWDPMPEEGGVANEGECSG-KKRSRWATEDPKISMLGQIKLPDFVKGLSGKKKKSRLARKKSRTKYKASRLGISMKDLADTDPEAWQLKLMLFNINNR

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
57			66	33	0.997452
59		66		33	0.997452
60	66		33		0.997452
150	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain