SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene68182

Length: 381 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene68182
CGTCGTGACCTTGGCTGTCACTCATCTATTTAGGACAAGGACACCTTGAGGAGAGGAATACCTTATATTATTCATTGACGACTTCTCCAGGATGGTTTGGTTAGGACTTATGAAGCACAAAGATGAAGCATTCAAAAAATTCAAATCTTTCAAAGCCTTGGTTGAAAATGAATCAGATCACAAAATTAAGTGCCTTAGGTCTGACAGAGGTGGGGAATTTACCTCAAATGAATTTTTCAATTTCTGTGAAGAACATGGAATAAGAAGGGAATTATCTACAGCTATGACTCGTCAGCAAAATGGAGTGGTGGAAAGGATGAATAGAACAATTCAACAAATGGCACGTGTTATGCTTGATGAGTCTGGAACTCCAGTAACCTT

Ace file of the UniGene sp_v2.0_unigene68182

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative gag-pol polyprotein, identical n=1 Tax=Solanum demissum RepID=Q6L3N8_SOLDE	-	-	1.0e-28	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	51%
Blast2go	copia-type polyprotein	-	-	4.18805e-33	69%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Ionotropic glutamate receptor	IPR001320	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Pleckstrin homology domain	IPR001849	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	K+ potassium transporter	IPR003855	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3		IPR010256	-	-
Sma3	Rhamnogalacturonate lyase	IPR010325	-	-
Sma3	Berberine/berberine-like	IPR012951	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	FAD-binding, type 2	IPR016166	-	-
Sma3	F-box associated interaction domain	IPR017451	-	-
Sma3	Peptidase A2A, retrovirus RVP subgroup	IPR018061	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKX7

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 145 aas, your sequence is shorter than subject: 126 - 407

Fln protein: VVTLAVTHLFRTRTP*GEEYLILFIDDFSRMVWLGLMKHKDEAFKKFKSFKALVENESDHKIKCLRSDRGGEFTSNEFFNFCEEHGIRRELSTAMTRQQNGVVERMNRTIQQMARVMLDESGTPVT

Protein Length: 127

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCTATTTAGGACAAGGACACCTTGAGGAGAGGAATACCTTATATTATTCATTGACGACTTCTCCAGGATGGTTTGGTTAGGACTTATGAAGCACAAAGATGAAGCATTCAAAAAATTCAAATCTTTCAAAGCCTTGGTTGAAAATGAATCAGATCACAAAATTAAGTGCCTTAGGTCTGACAGAGGTGGGGAATTTACCTCAAATGAATTTTTCAATTTCTGTGAAGAACATGGAATAAGAAGGGAATTATCTACAGCTATGACTCGTCAGCAAAATGGAGTGGTGGAAAGGATGAATAGAACAATTCAACAAATGGCACGTGTTATGCTTGATGAGTCTGGAACTCCAGTAACCTT

Fln Alignment:

AllPineV4_rep_c94087___GEEYLILFIDDFSRMVWLGLMKHKDEAFKKFKSFKALVENESDHKIKCLRSDRGGEFTSNEFFNFCEEHGIRRELSTAMTRQQNGVVERMNRTIQQMARVML
B8LKX7_______________GSRYVLTFIDDYSRRIWVYFLKNKDEVFEKFKEFKAFVEKQSGKSIKILRTDNGKEYVNKEFDHYCKYNGIKREHTVPYTPQQNGVAERKNRTLMEMARCML

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain