SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene68132

Length: 324 nt

Origin of reads: Biogeco2 v2

UniGene Fasta

>sp_v2.0_unigene68132
ATGGGTGCAATGAGAAAGCATTTGCCAGATCTTTTTGAAGAGCAACCTGACCTGTTACAGAAGTTGGTGACTCAACTATCTCCTTCAATATTGAAGTCTGAGGGTGTGCCAGTTTACAGGTGTGTCCAGCAAGCGGGGGAGTTCGTACTTACTTTTCCTCGAGCATATCATGGAGGCTTTAACTGTGGTTTTAACTGTGCCGAAGCTGTAAATGTAGCACCTGTTGACTGGTTACCACATGGACAACATGCAACGGAGCTTTATCAAGAGCTGTGCCGCAAAACAACTGTATCACATGATAAGCTACTACTGGGGACTGCAAGG

Ace file of the UniGene sp_v2.0_unigene68132

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Transcription factor, putative n=1 Tax=Ricinus communis RepID=B9S7K7_RICCO	-	-	85%
FL-Next	Isoform 2 of Probable lysine-specific demethylase JMJ14 OS=Arabidopsis thaliana GN=JMJ14	-	-	76%
Blast2go	jumonji domain protein	-	-	88%

Source	GOs	Term	Type	e value	Identity
Blast2go	pollen development	GO:0009555	Biological Process	0.0	88%
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	0.0	88%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F0 complex, subunit A	IPR000568	-	-
Sma3	ARID/BRIGHT DNA-binding domain	IPR001606	-	-
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3	Ribosomal protein L32p	IPR002677	-	-
Sma3	JmjC domain	IPR003347	-	-
Sma3	Transcription factor jumonji, JmjN	IPR003349	-	-
Sma3	FY-rich, N-terminal	IPR003888	-	-
Sma3	FY-rich, C-terminal	IPR003889	-	-
Sma3	Zinc finger, C5HC2-type	IPR004198	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3		IPR013129	-	-
Sma3	Lysine-specific demethylase-like domain	IPR013637	-	-
Sma3	FY-rich, C-terminal subgroup	IPR018516	-	-
Sma3	FY-rich, N-terminal subgroup	IPR018518	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8GUI6-2

Fln msg: Distance to subject end: 506 aas, your sequence is shorter than subject: 108 - 897

Fln protein: MGAMRKHLPDLFEEQPDLLQKLVTQLSPSILKSEGVPVYRCVQQAGEFVLTFPRAYHGGFNCGFNCAEAVNVAPVDWLPHGQHATELYQELCRKTTVSHDKLLLGTAR

Protein Length: 109

Fln nts: ATGGGTGCAATGAGAAAGCATTTGCCAGATCTTTTTGAAGAGCAACCTGACCTGTTACAGAAGTTGGTGACTCAACTATCTCCTTCAATATTGAAGTCTGAGGGTGTGCCAGTTTACAGGTGTGTCCAGCAAGCGGGGGAGTTCGTACTTACTTTTCCTCGAGCATATCATGGAGGCTTTAACTGTGGTTTTAACTGTGCCGAAGCTGTAAATGTAGCACCTGTTGACTGGTTACCACATGGACAACATGCAACGGAGCTTTATCAAGAGCTGTGCCGCAAAACAACTGTATCACATGATAAGCTACTACTGGGGACTGCAAGG

Fln Alignment:

AllPineV4_rep_c93964___MRKHLPDLFEEQPDLLQKLVTQLSPSILKSEGVPVYRCVQQAGEFVLTFPRAYHGGFNCGFNCAEAVNVAPVDWLPHGQHATELYQELCRKTTVSHDKLLLGTA
Q8GUI6-2_____________MKKRLPDLFEEQPDLLHQLVTQLSPRILKEEGVPVYRAVQRSGEFILTFPKAYHSGFNCGFNCAEAVNVAPVDWLVHGQNAVEGYSKQRRKSSLSHDKLLLGAA

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
252	66		33		0.997452
298			66	33	0.997459

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain