SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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InterPros
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene68127

Length: 281 nt

UniGene Fasta

>sp_v2.0_unigene68127
TGCCCATGGTATGGCAGATCTCCATCATCATTGTTTCATGCAAGTATTCACTGTGATCTAAAACCCAACAATGTGCTTCTTGGGGAAGATCTCACAGCCTACTTAATAGACTTTGGAATAGCTACCATATGTTTTGCAAATTCTGAGGAATCGGCTTATATTTCTACATATGCACTCAAAGGATCTGTAGGCTACATTCCTCCAGAATATGGATTAGGTGGGCCGGTCACAACAAAAGGTGATGTTTATAGCTATGGAATTGTGCTATTGGAGATGCTCAC

Ace file of the UniGene sp_v2.0_unigene68127

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative protein kinase Xa21 [Oryza sativa Japonica Group] dbj\|BAD69453.1\| putative protein kinase Xa21 [Oryza sativa Japonica Group]	-	-	7.0e-21	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	46%
Blast2go	protein kinase xa21	-	-	2.90409e-24	76%

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Fumarate lyase	IPR000362	-	-
Sma3	ATPase, F0 complex, subunit A	IPR000568	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AB18

Fln msg: Distance to subject end: 85 aas, your sequence is shorter than subject: 93 - 212

Fln protein: CPWYGKSPSSLFHASIHCDLKPNNVLLGEDLTAYLIDFGIATICFANSEESAYISTYALKGSVGYIPPEYGLGGPVTTKGDVYSYGIVLLEML

Protein Length: 94

Fln nts: TGCCCATGGTATGGCAaATCTCCATCATCATTGTTTCATGCAAGTATTCACTGTGATCTAAAACCCAACAATGTGCTTCTTGGGGAAGATCTCACAGCCTACTTAATAGACTTTGGAATAGCTACCATATGTTTTGCAAATTCTGAGGAATCGGCTTATATTTCTACATATGCACTCAAAGGATCTGTAGGCTACATTCCTCCAGAATATGGATTAGGTGGGCCGGTCACAACAAAAGGTGATGTTTATAGCTATGGAATTGTGCTATTGGAGATGCTCAC

Fln Alignment:

AllPineV4_rep_c93957___IHCDLKPNNVLLGEDLTAYLIDFGIATICFANSEESAYISTYALKGSVGYIPPEYGLGGPVTTKGDVYSYGIVLLEML
D5AB18_______________LHRDIKPSNILLDNNLNAYLSDFGLARLL----EVSETHATTDVHGTFGYVAPEYAATCRVSDKADVYSYGVVFLELL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain