SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene68126

Length: 374 nt

UniGene Fasta

>sp_v2.0_unigene68126
TTGGATATTTCTTCGATTAAGGCAGACTGCGATAAGGCCTTTTTGGCATTCAAGAGAGGAAGCCATAATAAATCCCTGAGGCTCATGAAGGAAGCATGTGCACGGAATGATAACTGCGCGCTGTTGCACCGTGTGCAGGGTACGATTAGTACGAAAATAGCGGCTCTTATCGAGGATCCCAATGTGAAACAACGTCACATGAAAACTGCAATTGAATCTGCAAAGAAAGCTGTTTTGCTTTCCCCTCAGTCTATTGAATTTGCCCACTTTTATGCACAACTACTTTTTGATACAGCCAATGATAGCAAGGGTTATGAAGAGGTTGTTCAGGAATGCGAGAGAGCTCTTTCTATAGAAAATCCAGTGGATCCAGC

Ace file of the UniGene sp_v2.0_unigene68126

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ubiquitin thiolesterase/ zinc ion binding	-	-	1.0e-37	60%
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	0.0	61%
Blast2go	ubiquitin carboxyl-terminal hydrolase-related protein	-	-	0.0	77%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2	IPR001394	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Domain of unknown function DUF629	IPR006865	-	-
Sma3	Domain of unknown function DUF627, N-terminal	IPR006866	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9R929

Fln msg: Distance to subject end: 1433 aas, your sequence is shorter than subject: 124 - 1617

Fln protein: LDISSIKADCDKAFLAFKRGSHNKSLRLMKEACARNDNCALLHRVQGTISTKIAALIEDPNVKQRHMKTAIESAKKAVLLSPQSIEFAHFYAQLLFDTANDSKGYEEVVQECERALSIENPVDP

Protein Length: 125

Fln nts: TTGGATATTTCTTCGATTAAGGCAGACTGCGATAAGGCCTTTTTGGCATTCAAGAGAGGAAGCCATAATAAATCCCTGAGGCTCATGAAGGAAGCATGTGCACGGAATGATAACTGCGCGCTGTTGCACCGTGTGCAGGGTACGATTAGTACGAAAATAGCGGCTCTTATCGAGGATCCCAATGTGAAACAACGTCACATGAAAACTGCAATTGAATCTGCAAAGAAAGCTGTTTTGCTTTCCCCTCAGTCTATTGAATTTGCCCACTTTTATGCACAACTACTTTTTGATACAGCCAATGATAGCAAGGGTTATGAAGAGGTTGTTCAGGAATGCGAGAGAGCTCTTTCTATAGAAAATCCAGTGGATCCAGC

Fln Alignment:

AllPineV4_rep_c93956___SSIKADCDKAFLAFKRGSHNKSLRLMKEACARN---DN-------CALLHRVQGTISTKIAALIEDPNVKQRHMKTAIESAKKAVLLSPQSIEFAHFYAQLLFDTANDSKGYEEVVQECERALSIENPVDP
B9R929_______________SSIKVECERALTALRRGNHTKALRLMKESCAKHGGGDNSNSTSHSAALIHRVQGTVCVKVASIIDDPNAKQRHLKNAIDSARKAAELSPNSIEFAHFYANLLYEAANDSKDYEDVLKECERALEIENPIDP

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
136	33	66			0.997458

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain