SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene68069

Length: 349 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene68069
CGTCGTGACCTTGGCTGTCACTCATTTTGTTAAAATTCTGTGAGTGTCAATCGAAGCTTCTGTACTTGTCTGGTGTTTTTTGGGCACTCTTGAACAGAGCTTTTTAGATTCTGCCTGCAAACGAGGACAATTCATACGTATCTGGAATGAGTGCTGCGAAAGATTGGCATACTATGGATTCAGTTCAAATCTGGTGAACTATTTGACAGATAAGTTCAAGCAAGGCAATTCAACTGCAGCCAATAATGTCACAAATTGGTCTGGAACTTGTTACATAACTCCTTTGATTGGAGCTTTTATGGCTGATGCGTACTGGGGACGTTATAAAACAATTGCTGTATTTCTATTG

Ace file of the UniGene sp_v2.0_unigene68069

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Peptide transporter, putative n=1 Tax=Ricinus communis RepID=B9T6M4_RICCO	-	-	9.0e-26	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	69%
Blast2go	proton-dependent oligopeptide transport family protein	-	-	2.84752e-30	85%

Source	GOs	Term	Type	e value	Identity
Blast2go	tripeptide transport	GO:0042939	Biological Process	2.84752e-30	85%
Blast2go	dipeptide transport	GO:0042938	Biological Process	2.84752e-30	85%
Blast2go	nitrogen compound metabolic process	GO:0006807	Biological Process	2.84752e-30	85%
Blast2go	tripeptide transporter activity	GO:0042937	Molecular Function	2.84752e-30	85%
Blast2go	dipeptide transporter activity	GO:0042936	Molecular Function	2.84752e-30	85%
Blast2go	plasma membrane	GO:0005886	Cellular Component	2.84752e-30	85%

Source	InterPros	Term	Type	Identity
Sma3	Oligopeptide transporter	IPR000109	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	PTR2 family proton/oligopeptide symporter, conserved site	IPR018456	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVR2

Fln msg: Distance to subject end: 465 aas, atg_distance in limit (1-15): atg_distance = 14, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 102 - 594

Fln protein: VSIEASVLVWCFLGTLEQSFLDSACKRGQFIRIWNECCERLAYYGFSSNLVNYLTDKFKQGNSTAANNVTNWSGTCYITPLIGAFMADAYWGRYKTIAVFLL

Protein Length: 103

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTGTTAAAATTCTGTGAGTGTCAATCGAAGCTTCTGTACTTGTCTGGTGTTTTTTGGGCACTCTTGAACAGAGCTTTTTAGATTCTGCCTGCAAACGAGGACAATTCATACGTATCTGGAATGAGTGCTGCGAAAGATTGGCATACTATGGATTCAGTTCAAATCTGGTGAACTATTTGACAGATAAGTTCAAGCAAGGCAATTCAACTGCAGCCAATAATGTCACAAATTGGTCTGGAACTTGTTACATAACTCCTTTGATTGGAGCTTTTATGGCTGATGCGTACTGGGGACGTTATAAAACAATTGCTGTATTTCTATTG

Fln Alignment:

AllPineV4_rep_c93802___NECCERLAYYGFSSNLVNYLTDKFKQGNSTAANNVTNWSGTCYITPLIGAFMADAYWGRYKTIAVF
A9NVR2_______________NECCERLAYYGINTNLVTYLTKRLHQGNAAAAKSVTTWAGTCYLTPLFGAVLADAYWGRYWTIAAF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain