SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene67777

Length: 477 nt

Origin of reads: Biogeco1 v2

UniGene Fasta

>sp_v2.0_unigene67777
GATGTTGGAGTTTGCCCTCGTCATTGCCGTGAAGGCATACGCTCTTCTCTGCACGATCCTTAATCTCACCTTTACTCAGGTAGGTAGAAAGGAACTATTCCACAGGGTCACAGGTCAAAGAGACACATGTTATGGTTCCTATTCCTATGTATGGAGTAGTTGGAAATTATGCTTCTACTATTTATGTGTCTGCTGTAAAAGCTAACATGTTGGATAGGGTTGAACCTGAGCTCAAAACCCTCATGGAAGCTATTAACAGTAATCTAAGTTTTTGAAATTTCATCAAGGATTAGTCTGTGCCAAGAGATACCAGACTAAAGGTCATGCGAGAAATTTTTGAGGAGTCCAGCTTTTCAGACATAACTAAGAACTTCTTAGGTAAGGATGGATTGAATGATTCGATCGTATTGTATGCTCTGCATTTCCGGTTATCCCACGAGATGAGTTTTGGCTACAGATTTCCAGACAGATAGGCTA

Ace file of the UniGene sp_v2.0_unigene67777

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	F1-ATP synthase delta subunit n=1 Tax=Wolffia arrhiza RepID=E9MW20_WOLAR	-	-	1.0e-21	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	67%
Blast2go	oligomycin sensitivity conferring protein	-	-	0.0	64%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell part	GO:0044464	Cellular Component	0.0	64%

Source	InterPros	Term	Type	e value	Identity
Sma3	ATPase, F1 complex, OSCP/delta subunit	IPR000711	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NMQ3

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 70 aas, your sequence is shorter than subject: 157 - 252

Fln protein: CWSLPSSLP*RHTLFSARSLISPLLR*VERNYSTGSQVKETHVMVPIPMYGVVGNYASTIYVSAVKANMLDRVEPELKTLMEAINSNLSF*NFIKD*SVPRDTRLKVMREIFEESSFSDITKNFLGKDGLNDSIVLYALHFRLSHEMSFGYRFPDR*

Protein Length: 158

Fln nts: GATGTTGGAGTTTGCCCTCGTCATTGCCGTGAAGGCATACGCTCTTCTCTGCACGATCCTTAATCTCACCTTTACTCAGGTAGGTAGAAAGGAACTATTCCACAGGGTCACAGGTCAAAGAGACACATGTTATGGTTCCTATTCCTATGTATGGAGTAGTTGGAAATTATGCTTCTACTATTTATGTGTCTGCTGTAAAAGCTAACATGTTGGATAGGGTTGAACCTGAGCTCAAAACCCTCATGGAAGCTATTAACAGTAATCTAAGTTTTTGAAATTTCATCAAGGATTAGTCTGTGCCAAGAGATACCAGACTAAAGGTCATGCGAGAAATTTTTGAGGAGTCCAGCTTTTCAGACATAACTAAGAACTTCTTAGGTAAGGATGGATTGAATGATTCGATCGTATTGTATGCTCTGCATTTCCGGTTATCCCACGAGATGAGTTTTGGCTACAGATTTCCAGACAGATAGGCTA

Fln Alignment:

AllPineV4_rep_c93156___SARSLISPLLR*VERNYSTGSQVKETHVMVPIPMYGVVGNYASTIYVSAVKANMLDRVEPELKTLMEAINSNLSF*NFIKD*SVPRDTRLKVMREIFEESSFSDITKNF------LGKDGLNDSIVLYALHFRLSHE
A9NMQ3_______________SAPASISPLFG-VARSYSAGSQVKETHVMVPIPMYGVAGNYASALYVSAVKANMLDRVESELKTLMEAVNNSPNFRIFIKDLSVPRDTRLKAVREIFEESSFSDITKNFLAVAAELGRLRQLESIVKAFMRLTLAHK

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
116			33	66	0.997452
198	66		33		0.997457
281	33			66	0.997461
285		66		33	0.997459

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain