SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene67765

Length: 330 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene67765
CGTCGTGACCTTGGCTGTCACTCAGAGTTGTATCAGACTAGTGTCCCATCAAGGAGTCGGATCCTGCTAGAATTAAATGCATTCTACTTCACAGAAATGAAGAGTAAGAGTAACCTATTTGAAAATGTTCAGGAAACAATAAGTAACAGATTAAAACCATGGGAACGGACAGTGCAGTTTTGGGTGAGAGCCGTGCATGTATATACCAGCTATAAGATTTGCCAGATTCGTGTGAAGTATGTCAAAGGGAAAGAGAAACAAGAGAGGATGTGGGAAGAGCAGCATGAGATTGCAGGGGACAGGATTTACTCGCTCTGTTATGATCTTGGG

Ace file of the UniGene sp_v2.0_unigene67765

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ubiquinone biosynthesis protein coq-8, putative n=1 Tax=Ricinus communis RepID=B9RAM3_RICCO	-	-	2.0e-19	54%
FL-Next	tr=Ubiquinone biosynthesis protein coq-8, putative; Ricinus communis (Castor bean).	-	-	0.0	54%
Blast2go	protein kinase-like protein	-	-	9.36276e-24	77%

Source	InterPros	Term	Type	e value	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	0.0	-
Sma3	ABC-1	IPR004147	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: tr_plants

Fln subject: B9RAM3

Fln msg: Distance to subject end: 424 aas, your sequence is shorter than subject: 78 - 503

Fln protein: MKSKSNLFENVQETISNRLKPWERTVQFWVRAVHVYTSYKICQIRVKYVKGKEKQERMWEEQHEIAGDRIYSLCYDLG

Protein Length: 79

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGAGTTGTATCAGACTAGTGTCCCATCAAGGAGTCGGATCCTGCTAGAATTAAATGCATTCTACTTCACAGAA_-_ATGAAGAGTAAGAGTAACCTATTTGAAAATGTTCAGGAAACAATAAGTAACAGATTAAAACCATGGGAACGGACAGTGCAGTTTTGGGTGAGAGCCGTGCATGTATATACCAGCTATAAGATTTGCCAGATTCGTGTGAAGTATGTCAAAGGGAAAGAGAAACAAGAGAGGATGTGGGAAGAGCAGCATGAGATTGCAGGGGACAGGATTTACTCGCTCTGTTATGATCTTGGG

Fln Alignment:

AllPineV4_c93118___FENVQETISNRLKPWERTVQFWVRAVHVYTSYKICQIRVKYVKGKEKQERMWEEQHEIAGDRIYSLCYDLG
B9RAM3_______________FKDIQYKLSTQLRPWQRSLQFWVRAVDIYAGYKVFQVRVSFVKDVQKQEAMWEMQHELAADKIYAMCSDLG

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
201	66		33		0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain