SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene67642

Length: 405 nt

UniGene Fasta

>sp_v2.0_unigene67642
CGTCGTGACCTTGGCTGTCACTCATTGTTGTAGACAGACACTTGAAATGGAAAAGGCTTCGCTAGAAAAAGCTGATAGAGTTTCTGAGCTGTGTGTGACTATTTCGTGCAATCTTGACAGTGACACAAATAAAATTGTTGGCAGTTGCCATGCACATAATATGATGGATGAATTAGCAATTACAAAGGCCAGGTTGAGCCATTGTTTATCATCGGTTAAGTTGCGTCGATGGTGTGCATATGAGTGGTTCTATAGTGGCATAGACTTGCCATGGTTTGAAAAAAATGAGTTTGTTGAGTACTTAAATCATGCACACCTTGGATGTGTTCCAAGGCTTACACGTGCTGAATGGGGTGTTATACGCAGTTCTCTTGGAAAGCCACGGCGCCTTTCAGAACGTATTTC

Ace file of the UniGene sp_v2.0_unigene67642

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein ALWAYS EARLY 3 [Arabidopsis thaliana] sp\|Q6A332.1\|ALY3_ARATH RecName: Full=Protein ALWAYS EARLY 3; Short=AtALY3 emb\|CAE47462.1\| always early protein 3 [Arabidopsis thaliana] gb\|AEE76508.1\| protein ALWAYS EARLY 3 [Arabidopsis thaliana]	-	-	2.0e-25	66%
FL-Next	sp=Protein ALWAYS EARLY 3; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	66%
Blast2go	dirp family expressed	-	-	8.45963e-32	79%

Source	InterPros	Term	Type	Identity
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	DIRP	IPR010561	-	-
Sma3		IPR014778	-	-
Sma3	SANT domain	IPR017884	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q6A332

Fln msg: Distance to subject end: 472 aas, your sequence is shorter than subject: 134 - 1132

Fln protein: VVTLAVTHCCRQTLEMEKASLEKADRVSELCVTISCNLDSDTNKIVGSCHAHNMMDELAITKARLSHCLSSVKLRRWCAYEWFYSGIDLPWFEKNEFVEYLNHAHLGCVPRLTRAEWGVIRSSLGKPRRLSERI

Protein Length: 135

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTGTTGTAGACAGACACTTGAAATGGAAAAGGCTTCGCTAGAAAAAGCTGATAGAGTTTCTGAGCTGTGTGTGACTATTTCGTGCAATCTTGACAGTGACACAAATAAAATTGTTGGCAGTTGCCATGCACATAATATGATGGATGAATTAGCAATTACAAAGGCCAGGTTGAGCCATTGTTTATCATCGGTTAAGTTGCGTCGATGGTGTGCATATGAGTGGTTCTATAGTGGCATAGACTTGCCATGGTTTGAAAAAAATGAGTTTGTTGAGTACTTAAATCATGCACACCTTGGATGTGTTCCAAGGCTTACACGTGCTGAATGGGGTGTTATACGCAGTTCTCTTGGAAAGCCACGGCGCCTTTCAGAACGTATTTC

Fln Alignment:

AllPineV4_rep_c92847___ELAITKARLSHCLSSVKLRRWCAYEWFYSGIDLPWFEKNEFVEYLNHAHLGCVPRLTRAEWGVIRSSLGKPRRLSER
Q6A332_______________KISETIEKFSHCISSFRARRWCIFEWFYSAIDYPWFARQEFVEYLDHVGLGHVPRLTRVEWGVIRSSLGKPRRFSEQ

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
299		33		66	0.997453

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain