SustainPineDB

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Assembly info
Unigenes
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene67602

Length: 352 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene67602
GTATGAACCGTGGATTTGATGTTGTTATAATCGATGAAGCTGCACAAGCTGTAGAGCCAGCAACTTTAGTTCCACTTGCCCATGGATGAAACAAGTAATTCTTGTTGGTGATCCAATTCAGTTGCCTGCTACTGTACTTTCTTCAAAGGCTGAACAGTTTGGATATGGCATGAGTTTGTTCAAGAGATTTCAATTGGCTGGTTATCCAGTTCAGATGCTCAAAACTCAGTACCGTATGCATCCTGAGATAAGGGAGTTCCCTTCAAGGGAATTCTACTCAGAGGCTTTAGAAGATGGCGAGGATGTTCTACATCAAACAAAGCGTGCATGGCATGAATATCATTGCTACATT

Ace file of the UniGene sp_v2.0_unigene67602 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein MAGATAMA 3 [Arabidopsis thaliana] gb\|ACI63222.1\| MAA3 [Arabidopsis thaliana] gb\|AEE83627.1\| protein MAGATAMA 3 [Arabidopsis thaliana]	-	-	4.0e-38	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	58%
Blast2go	probable helicase ddb_g0274399-like	-	-	2.94273e-44	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	embryo sac development	GO:0009553	Biological Process	2.94273e-44	80%
Blast2go	pollen tube guidance	GO:0010183	Biological Process	2.94273e-44	80%
Blast2go	pollen-pistil interaction	GO:0009875	Biological Process	2.94273e-44	80%

Source	InterPros	Term	Type	e value	Identity
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLV2

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 187 aas, your sequence is shorter than subject: 29 - 691

Fln protein: MNRGFDVVIIDEAAQAVEPATLVPLAHG*

Protein Length: 30

Fln nts: GTATGAACCGTGGATTTGATGTTGTTATAATCGATGAAGCTGCACAAGCTGTAGAGCCAGCAACTTTAGTTCCACTTGCCCATGGATGAAACAAGTAATTCTTGTTGGTGATCCAATTCAGTTGCCTGCTACTGTACTTTCTTCAAAGGCTGAACAGTTTGGATATGGCATGAGTTTGTTCAAGAGATTTCAATTGGCTGGTTATCCAGTTCAGATGCTCAAAACTCAGTACCGTATGCATCCTGAGATAAGGGAGTTCCCTTCAAGGGAATTCTACTCAGAGGCTTTAGAAGATGGCGAGGATGTTCTACATCAAACAAAGCGTGCATGGCATGAATATCATTGCTACATT

Fln Alignment:

AllPineV4_rep_c92756___FDVVIIDEAAQAVEPATLVPLAHG
B8LLV2_______________FDLVIIDEAGQAIEPSCWIPILQG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain