SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene67526

Length: 336 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene67526
CGTCGTGACCTTGGCTGTCACTCATTTTATATTGCATTCTCTCTTTTTCGTTCAGCATCTATTTTTGCGTGGTTTTCTTGTCTGTGGTTGAAGGGAAATGCCTCAGGGGGGGAACGTGCCAAGTCTGCTGGATGCTTAGCTATATATTTTATTGATACAGCTTGGAAGTTTATAAGTAGGGATTCAGTACTTCCAGACAGGCCATCATCTTCTGCTTTTGGAAATGTACCATTGGAAACAGATGTCTCTTTATCCCATATTCCAGCATACTCTCAAGATATGACTATCAAAGGAAATGGGTTTGTTCCTAGTGCAAGAGTACAGGAATTAAGAAAG

Ace file of the UniGene sp_v2.0_unigene67526

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative acetyl-coA dehydrogenase [Arabidopsis thaliana]	-	-	9.0e-13	41%
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	0.0	45%
Blast2go	acyl- dehydrogenase	-	-	4.36522e-19	58%

Source	ECs	Term	Type	e value	Identity
Blast2go	Acyl-CoA dehydrogenase.	EC:1.3.99.3	-	4.36522e-19	58%

Source	KEGGs	Term	e value	Identity
Blast2go	Fatty acid metabolism	00071	4.36522e-19	58%
Blast2go	Valine, leucine and isoleucine degradation	00280	4.36522e-19	58%
Blast2go	beta-Alanine metabolism	00410	4.36522e-19	58%
Blast2go	Propanoate metabolism	00640	4.36522e-19	58%
Blast2go	Metabolic pathways	01100	4.36522e-19	58%
Blast2go	Biosynthesis of secondary metabolites	01110	4.36522e-19	58%

Source	GOs	Term	Type	e value	Identity
Blast2go	root hair elongation	GO:0048767	Biological Process	4.36522e-19	58%
Blast2go	acyl-CoA dehydrogenase activity	GO:0003995	Molecular Function	4.36522e-19	58%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9RT93

Fln msg: Distance to subject end: 411 aas, your sequence is shorter than subject: 112 - 830

Fln protein: RRDLGCHSFYIAFSLFRSASIFAWFSCLWLKGNASGGERAKSAGCLAIYFIDTAWKFISRDSVLPDRPSSSAFGNVPLETDVSLSHIPAYSQDMTIKGNGFVPSARVQELRK

Protein Length: 113

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTATATTGCATTCTCTCTTTTTCGTTCAGCATCTATTTTTGCGTGGTTTTCTTGTCTGTGGTTGAAGGGAAATGCCTCAGGGGGGGAACGTGCCAAGTCTGCTGGATGCTTAGCTATATATTTTATTGATACAGCTTGGAAGTTTATAAGTAGGGATTCAGTACTTCCAGACAGGCCATCATCTTCTGCTTTTGGAAATGTACCATTGGAAACAGATGTCTCTTTATCCCATATTCCAGCATACTCTCAAGATATGACTATCAAAGGAAATGGGTTTGTTCCTAGTGCAAGAGTACAGGAATTAAGAAAG

Fln Alignment:

AllPineV4_rep_c92569___FYIAFSLFRSASIFAWFSCLWLKGNASGGERAKSAGCLAIYFIDTAWKFISRDSVLPDRPSSSAFGNVPLETDVSLSHIPAYSQD-----MTIKGNGFVPSARVQELRK
B9RT93_______________FYVAFGMFRGASIYAGVHSRWIMGNATGGERARNAGNQANGLIDFAWDFISKKSVLPDQPPSAPTGR---------GYITQFGRDNEVQRLSEEGGRFVPSKRVLELRK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain