SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene67390

Length: 304 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene67390
CGTCGTGACCTTGGCTGTCACTCAATTTTTCAGTCTCTTTTTGTGAAGAGATTAGATGATGTGGACCCCTGTGATGATCTGACTGATAAAGATATTCAAACATCTATTCAAAATGCTATTGGATTAAGAAGCGCACTCTTTGTACCTGAGGTACCCTTTCAAGTTCTGCTGAGGAGACAGATTGCTCGGCTTTTAGATCCAAGCCTCCAGTGTGTGCATTTTATTTATGAAGATCTGGTAAAGCTAGCGCATAGATGTGAGACAAGTGATCTGCTGCGATTTCCAGTGCTACAATGTGCCTTGA

Ace file of the UniGene sp_v2.0_unigene67390

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	similar to dynamin-like protein encoded by GenBank Accession Number X99669 [Arabidopsis thaliana]	-	-	4.0e-24	59%
FL-Next	sp=Dynamin-related protein 3A; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	69%
Blast2go	dynamin-related protein 3a	-	-	5.43821e-29	88%

Source	GOs	Term	Type	e value	Identity
Blast2go	peroxisome fission	GO:0016559	Biological Process	5.43821e-29	88%
Blast2go	GTP catabolic process	GO:0006184	Biological Process	5.43821e-29	88%
Blast2go	post-embryonic development	GO:0009791	Biological Process	5.43821e-29	88%
Blast2go	mitochondrial fission	GO:0000266	Biological Process	5.43821e-29	88%
Blast2go	phosphatidylinositol binding	GO:0035091	Molecular Function	5.43821e-29	88%
Blast2go	protein binding	GO:0005515	Molecular Function	5.43821e-29	88%
Blast2go	GTPase activity	GO:0003924	Molecular Function	5.43821e-29	88%
Blast2go	cytosol	GO:0005829	Cellular Component	5.43821e-29	88%
Blast2go	peroxisome	GO:0005777	Cellular Component	5.43821e-29	88%
Blast2go	mitochondrion	GO:0005739	Cellular Component	5.43821e-29	88%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	5.43821e-29	88%
Blast2go	membrane	GO:0016020	Cellular Component	5.43821e-29	88%

Source	InterPros	Term	Type	Identity
Sma3	Dynamin central domain	IPR000375	-	-
Sma3	Dynamin, GTPase domain	IPR001401	-	-
Sma3	Dynamin GTPase effector	IPR003130	-	-
Sma3	Dynamin, GTPase region, conserved site	IPR019762	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8S944

Fln msg: Distance to subject end: 316 aas, your sequence is shorter than subject: 101 - 808

Fln protein: RRDLGCHSIFQSLFVKRLDDVDPCDDLTDKDIQTSIQNAIGLRSALFVPEVPFQVLLRRQIARLLDPSLQCVHFIYEDLVKLAHRCETSDLLRFPVLQCAL

Protein Length: 102

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTTCAGTCTCTTTTTGTGAAGAGATTAGATGATGTGGACCCCTGTGATGATCTGACTGATAAAGATATTCAAACATCTATTCAAAATGCTATTGGATTAAGAAGCGCACTCTTTGTACCTGAGGTACCCTTTCAAGTTCTGCTGAGGAGACAGATTGCTCGGCTTTTAGATCCAAGCCTCCAGTGTGTGCATTTTATTTATGAAGATCTGGTAAAGCTAGCGCATAGATGTGAGACAAGTGATCTGCTGCGATTTCCAGTGCTACAATGTGCCTTGA

Fln Alignment:

AllPineV4_c92226___HSIFQSLFVKRLXXXXXXXXXXXXXIQTSIQNAIGLRSALFVPEVPFQVLLRRQIARLLDPSLQCVHFIYEDLVKLAHRCETSDLLRFPVLQ
Q8S944_______________HYIFQSIFVKSLEEVDPCEDLTDDDIRTAIQNATGPRSALFVPDVPFEVLVRRQISRLLDPSLQCARFIFEELIKISHRCMMNELQRFPVLR

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
101	66		33		0.997464
102		66		33	0.997464

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain