SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene67379

Length: 302 nt

UniGene Fasta

>sp_v2.0_unigene67379
AAGAGAAAGCGAATCAGAACGTATTACTAGATGGCATCTGCGACTTGAGTATTTTGCATATGAAACATTGCAAGATTTGCGAATCAGCCAGCTTTTTGACATCATTGTAGACTATCCTGAGAGTGAAGACACCATTAAGGATTTAAAACAATGCTTGGACAACACTGGCCAACATGCAAAGCTGGTTGATTCATTTCTTTCTGCTTTACGCTATCGCCTTCTTATTGCTGGTGCCTCTACTAATGATATATTAGCGCAGTATGTATCCACCATTAAAGCACTTCGAACTCTGGATCCAACTG

Ace file of the UniGene sp_v2.0_unigene67379

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	OJ000223_09.3 protein n=5 Tax=Oryza sativa RepID=Q7XQF0_ORYSJ	-	-	4.0e-38	80%
FL-Next	sp=Anaphase-promoting complex subunit 2; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	77%
Blast2go	anaphase-promoting complex subunit 2-like	-	-	0.0	89%

Source	GOs	Term	Type	Identity
Blast2go	megagametogenesis	GO:0009561	Biological Process	89%
Blast2go	protein binding	GO:0005515	Molecular Function	89%
Blast2go	spindle	GO:0005819	Cellular Component	89%
Blast2go	nucleus	GO:0005634	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Sma3	Cullin, N-terminal	IPR001373	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-
Sma3	Anaphase-promoting complex subunit 2, C-terminal	IPR014786	-	-
Sma3	Cullin homology	IPR016158	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q8H1U5

Fln msg: Distance to subject end: 428 aas, your sequence is shorter than subject: 100 - 865

Fln protein: RESESERITRWHLRLEYFAYETLQDLRISQLFDIIVDYPESEDTIKDLKQCLDNTGQHAKLVDSFLSALRYRLLIAGASTNDILAQYVSTIKALRTLDPT

Protein Length: 101

Fln nts: AAGAGAAAGCGAATCAGAACGTATTACTAGATGGCATCTGCGACTTGAGTATTTTGCATATGAAACATTGCAAGATTTGCGAATCAGCCAGCTTTTTGACATCATTGTAGACTATCCTGAGAGTGAAGACACCATTAAGGATTTAAAACAATGCTTGGACAACACTGGCCAACATGCAAAGCTGGTTGATTCATTTCTTTCTGCTTTACGCTATCGCCTTCTTATTGCTGGTGCCTCTACTAATGATATATTAGCGCAGTATGTATCCACCATTAAAGCACTTCGAACTCTGGATCCAACTG

Fln Alignment:

AllPineV4_rep_c92191___SERITRWHLRLEYFAYETLQDLRISQLFDIIVDYPESEDTIKDLKQCLDNTGQHAKLVDSFLSALRYRLLIAGASTNDILAQYVSTIKALRTLDP
Q8H1U5_______________SEGIVRWKLRLEYFAYETLQDLRIAKLFEIIVDYPESSPAIEDLKQCLEYTGQHSKLVESFISSLKYRLLTAGASTNDILHQYVSTIKALRAIDP

SNPs (tot: 3)

Position	A %	C %	G %	Probability
57	33	66		0.997452
60	66		33	0.997452
62	33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain