SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene67151

Length: 343 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene67151
CGTCGTGACCTTGGCTGTCACTCAATTTCTGCTGTATGTGCTGGAGTTTTACTAGTAACGCTTGCAGCATCTATTGAATTGCTCCCCAGCTGGTTGCGATGGTGTGTGGGAGCAATTGGAATGTGCCCATTTTTATTTGGTTTAACTGTGCTGTCACTAATTGAACAAGATGAAGGACGCCACAGCTTTGGGCATAGTGGAGGATTCATTTGTCCATTTGTACCAGTACTCCCTGCAGCATGTATTCTAATAAATGTCTATTTGGTGATCAATCTAGGGTAATTCTAAATCCAAACACTAACAGTTTTCAGTATTAATTGAAAGCTTCTAGTCTTTTTAAGGT

Ace file of the UniGene sp_v2.0_unigene67151

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	cationic amino acid transporter 3 [Arabidopsis thaliana] dbj\|BAC42395.1\| putative cationic amino acid transporter [Arabidopsis thaliana] gb\|AED94130.1\| cationic amino acid transporter 3 [Arabidopsis thaliana]	-	-	4.0e-21	55%
FL-Next	tr=Putative uncharacterized protein CAT1-2; Selaginella moellendorffii (Spikemoss).	-	-	0.0	58%
Blast2go	cationic amino acid transporter	-	-	7.36239e-28	70%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to light stimulus	GO:0009416	Biological Process	7.36239e-28	70%
Blast2go	response to cold	GO:0009409	Biological Process	7.36239e-28	70%
Blast2go	cellular response to sulfate starvation	GO:0009970	Biological Process	7.36239e-28	70%
Blast2go	cellular response to nitrogen starvation	GO:0006995	Biological Process	7.36239e-28	70%
Blast2go	response to cadmium ion	GO:0046686	Biological Process	7.36239e-28	70%
Blast2go	cellular response to phosphate starvation	GO:0016036	Biological Process	7.36239e-28	70%
Blast2go	cobalt ion binding	GO:0050897	Molecular Function	7.36239e-28	70%
Blast2go	basic amino acid transmembrane transporter activity	GO:0015174	Molecular Function	7.36239e-28	70%
Blast2go	cell wall	GO:0005618	Cellular Component	7.36239e-28	70%
Blast2go	peroxisome	GO:0005777	Cellular Component	7.36239e-28	70%
Blast2go	mitochondrion	GO:0005739	Cellular Component	7.36239e-28	70%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	7.36239e-28	70%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	7.36239e-28	70%
Blast2go	vacuole	GO:0005773	Cellular Component	7.36239e-28	70%
Blast2go	cytosolic ribosome	GO:0022626	Cellular Component	7.36239e-28	70%
Blast2go	plasma membrane	GO:0005886	Cellular Component	7.36239e-28	70%
Blast2go	apoplast	GO:0048046	Cellular Component	7.36239e-28	70%

Source	InterPros	Term	Type	Identity
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Amino acid/polyamine transporter I	IPR002293	-	-
Sma3	Amino acid permease domain	IPR004841	-	-
Sma3	Cationic amino acid transporter	IPR015606	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-
Sma3	Cyclic nucleotide-binding, conserved site	IPR018488	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: tr_plants

Fln subject: D8S694

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 35 aas, putative chimeric sequence, your sequence is shorter than subject: 94 - 649

Fln protein: RRDLGCHSISAVCAGVLLVTLAASIELLPSWLRWCVGAIGMCPFLFGLTVLSLIEQDEGRHSFGHSGGFICPFVPVLPAACILINVYLVINLG*

Protein Length: 95

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTCTGCTGTATGTGCTGGAGTTTTACTAGTAACGCTTGCAGCATCTATTGAATTGCTCCCCAGCTGGTTGCGATGGTGTGTGGGAGCAATTGGAATGTGCCCATTTTTATTTGGTTTAACTGTGCTGTCACTAATTGAACAAGATGAAGGACGCCACAGCTTTGGGCATAGTGGAGGATTCATTTGTCCATTTGTACCAGTACTCCCTGCAGCATGTATTCTAATAAATGTCTATTTGGTGATCAATCTAGGGTAA___TTCTAAATCCAAACACTAACAGTTTTCAGTATTAATTGAAAGCTTCTAGTCTTTTTAAGGT

Fln Alignment:

AllPineV4_rep_c91688___RRDLGCHSISAVCAGVLLVTLAASIELLPSWLRWCVGAIGMCPFLFGLTVLSLIEQDEGRHSFGHSGGFICPFVPVLPAACILINVYLVINLG
D8S694_______________RRRYAACGISGVCIGVVLLSIATSATLLPSWLCWIMGVIGTSMLLVGSAILLLIDQDEGRHQFGQSGGFHCPGVPVLPILCIMVNVYLLANLG

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain