SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene66820

Length: 362 nt

Origin of reads: Biogeco2 v2 Uagpf v2

UniGene Fasta

>sp_v2.0_unigene66820
ATGGGGAAACTAAATAATTGGACAGCTTCGTCAAAATACTGGAACGGGGCTCATTCCTTGAGATCAGCCCGCGATCGAGTCCCTGCACTCGCCATCGGCCACTGTCTACAAGGACTCTGGCACTCACAGGTTTCGCACTATTGAATTCCTTTCTGAAGTTCGCCTGGGCTTCTTGGATCCGGAAGGGTTTTTACTGCGCATTGCATCGCCACAACATTGACCAGCTGGCATCTGCTGGTTACGTTCTGTTCTCTGCATATAGCATTATGGTTGAAACTGTTTGAACATAAGCCATTTGATGCACGGGCTGTAATGGGATTTGGTATTTTGAATGGTATCTCTATTGGACTTCTGAACCTCTG

Ace file of the UniGene sp_v2.0_unigene66820

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	nodulin MtN21 /EamA-like transporter protein [Arabidopsis thaliana] ref\|NP_001077471.1\| nodulin MtN21 /EamA-like transporter protein [Arabidopsis thaliana] sp\|Q8RXL8.1\|Y1689_ARATH RecName: Full=Uncharacterized membrane protein At1g06890 gb\|AAL87295.1\| unk	-	-	7.0e-13	88%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	100%
Blast2go	nodulin 21 -like transporter protein	-	-	4.34286e-16	97%

Source	GOs	Term	Type	e value	Identity
Blast2go	Golgi apparatus	GO:0005794	Cellular Component	4.34286e-16	97%

Source	InterPros	Term	Type	e value	Identity
Sma3	Domain of unknown function DUF250	IPR004853	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PTR1

Fln msg: Distance to subject end: 260 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 68 - 352

Fln protein: SSPGLLGSGRVFTAHCIATTLTSWHLLVTFCSLHIALWLKLFEHKPFDARAVMGFGILNGISIGLLNL

Protein Length: 69

Fln nts: ATGGGGAAACTAAATAATTGGACAGCTTCGTCAAAATACTGGAACGGGGCTCATTCCTTGAGATCAGCCCGCGATCGAGTCCCTGCACTCGCCATCGGCCACTGTCTACAAGGACTCTGGCACTCACAGGTTTCGCACTATTGAATTCCTTTCTGAAGTTCGCCTGGGCTTCTTGGATCCGGAAGGGTTTTTACTGCGCATTGCATCGCCACAACATTGACCAGCTGGCATCTGCTGGTTACGTTCTGTTCTCTGCATATAGCATTATGGTTGAAACTGTTTGAACATAAGCCATTTGATGCACGGGCTGTAATGGGATTTGGTATTTTGAATGGTATCTCTATTGGACTTCTGAACCTCTG

Fln Alignment:

AllPineV4_rep_c90866___ATTLTSWHLLVTFCSLHIALWLKLFEHKPFDARAVM
C0PTR1_______________ATTLTSWHLLVTFCSLHIALWLKLFEHKPFDARAVM

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
94	66		33		0.997458
100	33	66			0.997458
102	66	33			0.997458
103		66		33	0.997458

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain