SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene66732

Length: 202 nt

UniGene Fasta

>sp_v2.0_unigene66732
ATGGGAATGCAGGTGGAGGTAAGCAGAAGAGAAGGGAAGGCCCTGGGCATTCGCATGTTCTGTTCCAAAAAGTCAGGATTGCTTCTATCCACAATCAAGGCTCTGGATGGGCTTGGTCTTGATGTTAAGCAAGCAATCATAAGCTGCCTCAATGGATTTGCACTAGATGTATTTCGAGCAGAGGTAATGTAATGTTTGAATT

Ace file of the UniGene sp_v2.0_unigene66732

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Helix-loop-helix DNA-binding [Medicago truncatula]	-	-	2.0e-16	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Blast2go	transcription factor ice1	-	-	1.06499e-25	87%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to freezing	GO:0050826	Biological Process	1.06499e-25	87%
Blast2go	guard mother cell differentiation	GO:0010444	Biological Process	1.06499e-25	87%
Blast2go	positive regulation of transcription, DNA-dependent	GO:0045893	Biological Process	1.06499e-25	87%
Blast2go	DNA binding	GO:0003677	Molecular Function	1.06499e-25	87%
Blast2go	nucleus	GO:0005634	Cellular Component	1.06499e-25	87%

Source	InterPros	Term	Type	e value	Identity
Sma3		IPR001092	-	0.0	-
Sma3	Helix-loop-helix DNA-binding	IPR011598	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A934

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 20 aas, your sequence is shorter than subject: 64 - 175

Fln protein: MGMQVEVSRREGKALGIRMFCSKKSGLLLSTIKALDGLGLDVKQAIISCLNGFALDVFRAEVM*

Protein Length: 65

Fln nts: ATGGGAATGCAGGTGGAGGTAAGCAGAAGAGAAGGGAAGGCCCTGGGCATTCGCATGTTCTGTTCCAAAAAGTCAGGATTGCTTCTATCCACAATCAAGGCTCTGGATGGGCTTGGTCTTGATGTTAAGCAAGCAATCATAAGCTGCCTCAATGGATTTGCACTAGATGTATTTCGAGCAGAGGTAATGTAATGTTTGAATT

Fln Alignment:

AllPineV4_rep_c90676___VEVSRREGKALGIRMFCSKKSGLLLSTIKALDGLGLDVKQAIISCLNGFALDVFRAE
D5A934_______________VEVSTREGKALNIHMFCSKKPGLLLSTMRALDELGLDVKQAIISCLNGFALDVFRAE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain