SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene66639

Length: 185 nt

UniGene Fasta

>sp_v2.0_unigene66639
GTACACTTCTGCATCTCCAGTTGTCCAATGGTTTTGGGAAGTTGTTCAGAGTTTTAGTAAGGAGGACATGGCACGTTTACTGCAGTTTATCACTGGGACATCCAAAGTCCCATTGGAAGGATTTAAGGCTCTTCAAGGCATATCTGGAACTCAGAGGTTTCAGATTCACAAAGCATATGGATCCC

Ace file of the UniGene sp_v2.0_unigene66639

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ubiquitin-protein ligase 2 [Arabidopsis thaliana]	-	-	2.0e-23	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	46%
Blast2go	ubiquitin-protein upl1	-	-	3.38374e-30	94%

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal	IPR000449	-	-
Sma3	HECT	IPR000569	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Ubiquitin interacting motif	IPR003903	-	-
Sma3	E3 ubiquitin ligase, domain of unknown function DUF908	IPR010309	-	-
Sma3	E3 ubiquitin ligase, domain of unknown function DUF913	IPR010314	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote	IPR015940	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKQ9

Fln msg: Distance to subject end: 43 aas, your sequence is shorter than subject: 61 - 1032

Fln protein: YTSASPVVQWFWEVVQSFSKEDMARLLQFITGTSKVPLEGFKALQGISGTQRFQIHKAYGS

Protein Length: 62

Fln nts: GTACACTTCTGCATCTCCAGTTGTCCAATGGTTTTGGGAAGTTGTTCAGAGTTTTAGTAAGGAGGACATGGCACGTTTACTGCAGTTTATCACTGGGACATCCAAAGTCCCATTGGAAGGATTTAAGGCTCTTCAAGGCATATCTGGAACTCAGAGGTTTCAGATTCACAAAGCATATGGATCCC

Fln Alignment:

AllPineV4_rep_c90436___YTSASPVVQWFWEVVQSFSKEDMARLLQFITGTSKVPLEGFKALQ
B8LKQ9_______________YSEDHPVIEMFWEVIKQFSLEQQKKFLKFVTGCSRGPLLGFKYLE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain