SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene66414

Length: 392 nt

Origin of reads: Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene66414
CGTCGTGACCTTGGCTGTCACTCAGAGAGCTGGGATATCCCTCATATCCTGAGAGCAACGGAACCTGGCGCTTCCCTGGGATTGACGAATTTCAGTGCTATGACAAGTACATGAAGGCGTCCTTAAGAGCCTGCTCAGAGGCTGTTGGTAAGGGCGACTGGGGCCGAGACTGCCCTCGCGATTCAAGGAATTATAGCCAGATTCCAGAAGACGCTGGCTTCTTTCATGGGGAAGGAACATGGAAGACCGATTATGGGAGATTCTTCCTCAATTGGTATTCGGAGATGCTGGTTGCTCATGGTGACAGAATTCTAAGTGCTGCAGAGGGCATTTTCAGGGCTAGCGGTGCCAAATTATCTGGAAAGGTTGCAGGGATCCACTCGCATTACAAC

Ace file of the UniGene sp_v2.0_unigene66414 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	beta-amylase PCT-BMYI [Solanum tuberosum]	-	-	68%
FL-Next	sp=Beta-amylase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	61%
Blast2go	beta-amylase chloroplastic-like isoform 2	-	-	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	Beta-amylase.	EC:3.2.1.2	-	0.0	80%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	80%
Blast2go	Metabolic pathways	01100		0.0	80%

Source	GOs	Term	Type	Identity
Blast2go	response to cold	GO:0009409	Biological Process	80%
Blast2go	maltose biosynthetic process	GO:0000024	Biological Process	80%
Blast2go	starch catabolic process	GO:0005983	Biological Process	80%
Blast2go	beta-amylase activity	GO:0016161	Molecular Function	80%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	80%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 14B, plant	IPR001371	-	-
Sma3	Glycoside hydrolase, family 14	IPR001554	-	-
Sma3	BZR1, transcriptional repressor	IPR008540	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Glycoside hydrolase, family 14, conserved site	IPR018238	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NVE4

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 165 aas, your sequence is shorter than subject: 130 - 492

Fln protein: S*PWLSLRELGYPSYPESNGTWRFPGIDEFQCYDKYMKASLRACSEAVGKGDWGRDCPRDSRNYSQIPEDAGFFHGEGTWKTDYGRFFLNWYSEMLVAHGDRILSAAEGIFRASGAKLSGKVAGIHSHYN

Protein Length: 131

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGAGAGCTGGGATATCCCTCATATCCTGAGAGCAACGGAACCTGGCGCTTCCCTGGGATTGACGAATTTCAGTGCTATGACAAGTACATGAAGGCGTCCTTAAGAGCCTGCTCAGAGGCTGTTGGTAAGGGCGACTGGGGCCGAGACTGCCCTCGCGATTCAAGGAATTATAGCCAGATTCCAGAAGACGCTGGCTTCTTTCATGGGGAAGGAACATGGAAGACCGATTATGGGAGATTCTTCCTCAATTGGTATTCGGAGATGCTGGTTGCTCATGGTGACAGAATTCTAAGTGCTGCAGAGGGCATTTTCAGGGCTAGCGGTGCCAAATTATCTGGAAAGGTTGCAGGGATCCACTCGCATTACAAC

Fln Alignment:

AllPineV4_rep_c89978___ELGYPSYPESNGTWRFPGIDEFQCYDKYMKASLRACSEAVGKGDWGRDCPRDSRNYSQIPEDAGFFHGEGTWKTDYGRFFLNWYSEMLVAHGDRILSAAEGIFRASGAKLSGKVAGIHSHY
A9NVE4_______________ELRYPSYPESNGTWKFPGIGAFQCYDKYMLANLKATAETAGKKEWGCGGPTNAGYYNNWSEETEFFCSEGGWNSPYGEFFLQWYSNMLLNHGERILAEAESIFHKSGARLSGKVAGIHWHY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain