SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene66380

Length: 496 nt

Origin of reads: Biogeco1 v2

UniGene Fasta

>sp_v2.0_unigene66380
ATGGGGAGTCCACCTCTTTTGTCTCCTTGTATTAGCAATCTGAAGGTTGGGGACCCTGCGAGGCGGATTTCACAGAGGAATTCAAAGAGGACGTCTGCCATCTGTTGCAGCTCCATTACTAAAGATTTGGGGCAGGAAGTAGAGCAAGTTCTTGATCAAGAACATTCAAACTTTTTGCAATCATGTGTTGAGGATGAATTGATATGGCTGAAACTCCAGGTTCAGGTTTATATCCTTTGCACCATTGTAAAACTTTGCACCTGGTAAGGCATGGGCAGGGCTACCATAATGTGGCAGGAGAGAAAGACTTTGGTGCATACATGTCATATGAATATGTCGATGCATGCCTCACTCCTTTAGGATGGCAGCAGGTTGACAATCTTCGTAAGCATATTTGGAAAACTGGCATTGCTCCTAGGATTGAATTGGTCGTGACTTCTCCTTTAATGAGGACTATGCAGACAGCAGTGGGTGTTTTTGGTGGTGAAGGCTATGT

Ace file of the UniGene sp_v2.0_unigene66380

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	His_Phos_1 domain containing protein	-	-	3.0e-11	31%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Blast2go	phosphoglycerate mutase-like protein	-	-	0.0	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast	GO:0009507	Cellular Component	0.0	81%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Phosphoglycerate/bisphosphoglycerate mutase, active site	IPR001345	-	-
Sma3	Histidine phosphatase superfamily, clade-1	IPR013078	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ABX9

Fln msg: Distance to subject end: 189 aas, your sequence is shorter than subject: 97 - 287

Fln protein: MAETPGSGLYPLHHCKTLHLVRHGQGYHNVAGEKDFGAYMSYEYVDACLTPLGWQQVDNLRKHIWKTGIAPRIELVVTSPLMRTMQTAVGVFGGEGY

Protein Length: 98

Fln nts: ATGGGGAGTCCACCTCTTTTGTCTCCTTGTATTAGCAATCTGAAGGTTGGGGACCCTGCGAGGCGGATTTCACAGAGGAATTCAAAGAGGACGTCTGCCATCTGTTGCAGCTCCATTACTAAAGATTTGGGGCAGGAAGTAGAGCAAGTTCTTGATCAAGAACATTCAAACTTTTTGCAATCATGTGTTGAGGATGAATTGAT_-_ATGGCTGAAACTCCAGGTTCAGGTTTATATCCTTTGCACCATTGTAAAACTTTGCACCTGGTAAGGCATGGGCAGGGCTACCATAATGTGGCAGGAGAGAAAGACTTTGGTGCATACATGTCATATGAATATGTCGATGCATGCCTCACTCCTTTAGGATGGCAGCAGGTTGACAATCTTCGTAAGCATATTTGGAAAACTGGCATTGCTCCTAGGATTGAATTGGTCGTGACTTCTCCTTTAATGAGGACTATGCAGACAGCAGTGGGTGTTTTTGGTGGTGAAGGCTATGT

Fln Alignment:

AllPineV4_rep_c89890___MAETPGSGLYPLHHCKTLHLVRHGQGYHNVAGEKDFGAYMSYEYVDACLTPLGWQQVDNLRKHIWKTGIAPRIELVVTSPLMRTMQTAVGVFGGEGY
D5ABX9_______________MAKTPDSGLYPLHHCKILHMVRHGQGYHNVAGEKDFGAYMSYEYVDASLTPLGWQQVDNLRNHIWKTGFASRIELVVTSPLMRTMQTAVGVFGGGGY

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain