SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene66356

Length: 348 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene66356
CGTCGTGACCTTGGCTGTCACTCATTCCACGGTCTGATATTGACGTTGCAGCTGTTCGCTCCAGTCGGCATCGTCTTGCTATATTGCGTAATGACCATAAGGACATAACAGAAAAAATAGATCAGAATCTTCAGATATTGCTGTCAGGAGGTCGTCTTGGAGATTCACCAATGCCACCCCAAAGAAGAAGAGATGCTGCCACTTCTGAAAATCAATCTACTCCAATGGATGAAGATGCAATTGTGAGGCTTCCATTCTCTCTGGTTGATGAAATATTTGATGGGTCTCCTGCTGCATCAGATGGACTTCAACTAGGAGATCAGATCCTGTAAATTTGGTTCTGTGGAT

Ace file of the UniGene sp_v2.0_unigene66356

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	26S proteasome non-atpase regulatory subunit, putative n=1 Tax=Ricinus communis RepID=B9STR0_RICCO	-	-	1.0e-21	46%
FL-Next	tr=Putative uncharacterized protein Sb02g024860; Sorghum bicolor (Sorghum) (Sorghum vulgare).	-	-	0.0	53%
Blast2go	26s proteasome non-atpase regulatory	-	-	1.22441e-27	65%

Source	InterPros	Term	Type	e value	Identity
Sma3	PDZ domain	IPR001478	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: C5XCV7

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 54 aas, your sequence is shorter than subject: 110 - 213

Fln protein: S*PWLSLIPRSDIDVAAVRSSRHRLAILRNDHKDITEKIDQNLQILLSGGRLGDSPMPPQRRRDAATSENQSTPMDEDAIVRLPFSLVDEIFDGSPAASDGLQLGDQIL*

Protein Length: 111

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTCCACGGTCTGATATTGACGTTGCAGCTGTTCGCTCCAGTCGGCATCGTCTTGCTATATTGCGTAATGACCATAAGGACATAACAGAAAAAATAGATCAGAATCTTCAGATATTGCTGTCAGGAGGTCGTCTTGGAGATTCACCAATGCCACCCCAAAGAAGAAGAGATGCTGCCACTTCTGAAAATCAATCTACTCCAATGGATGAAGATGCAATTGTGAGGCTTCCATTCTCTCTGGTTGATGAAATATTTGATGGGTCTCCTGCTGCATCAGATGGACTTCAACTAGGAGATCAGATCCTGTAAATTTGGTTCTGTGGAT

Fln Alignment:

AllPineV4_rep_c89794___PRSDIDVAAVRSSRHRLAILRNDHKDITEKIDQNLQILLSGGRLGDSPMPPQRRRDAAT----SENQSTPMDEDAIVRLPFSLVDEIFDGSPAASDGLQLGDQIL
C5XCV7_______________PRSDIDIPNVLAQRRRLAELRNDHKDVTNKIDKNLEILHSA-KLSRNEQSTSRRSDTTSPSHIGSSQSEPMEEDHVSKLPFAMIDEITDGSPASVDGLQLGDEIV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain