SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene66294

Length: 507 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene66294
AACAGGAGTGGCAACTTCTATGAATCTCAATGGCCCAATTGATGTAGCTAAGCATGTTTTAAGATATGAAGGAGCCAGAGGATTACTTAAGGGTTTAGTGCCTACTTTATCAAGGGATGTGCCTGGAAACGCCATTGCGTTCGGTGTGTATGAAGCTCTGAAGCAGTTGATGGCAGGAGGGCGTGATACATCTCAATTGGGCATGGGTGCCCTGCTTACTTCTGGTGGGATTGCTGGCGCTGCTTGCTGGGCACTTATCTATCCAACTGATGTTGTGAAGAGTGTCATCCAGATTGATGAATTTCACCAGCCAAAGTATGCTGGTTCAATTGATGCATTCAAGAAAATAGTCACTTCAGAAGGGTTTAAGGGCTTGTATAAAGGATTTGGTCCAGCCATATTAAGAAGTGTTCCTGCCAATGCGACATGCTTCCTTGCTTACGAGTTTACCAGGTCAATCTTGGGATGATGAGAAATTCTAATCAAATCCTGTTCTATTGTGAGAAT

Ace file of the UniGene sp_v2.0_unigene66294

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Protein dif-1, putative n=1 Tax=Ricinus communis RepID=B9S1F6_RICCO	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	76%
Blast2go	mitochondrial carnitine acylcarnitine carrier-like protein	-	-	81%

Source	GOs	Term	Type	Identity
Blast2go	mitochondrial transport	GO:0006839	Biological Process	81%
Blast2go	ornithine transport	GO:0015822	Biological Process	81%
Blast2go	chloroplast	GO:0009507	Cellular Component	81%
Blast2go	mitochondrion	GO:0005739	Cellular Component	81%

Source	InterPros	Term	Type	Identity
Sma3		IPR001993	-	-
Sma3	Mitochondrial brown fat uncoupling protein	IPR002030	-	-
Sma3	Mitochondrial carrier protein	IPR002067	-	-
Sma3	Adenine nucleotide translocator 1	IPR002113	-	-
Sma3	Mitochondrial substrate/solute carrier	IPR018108	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LPX0

Fln msg: your sequence is shorter than subject: 156 - 308

Fln protein: TGVATSMNLNGPIDVAKHVLRYEGARGLLKGLVPTLSRDVPGNAIAFGVYEALKQLMAGGRDTSQLGMGALLTSGGIAGAACWALIYPTDVVKSVIQIDEFHQPKYAGSIDAFKKIVTSEGFKGLYKGFGPAILRSVPANATCFLAYEFTRSILG*

Protein Length: 157

Fln nts: AACAGGAGTGGCAACTTCTATGAATCTCAATGGCCCAATTGATGTAGCTAAGCATGTTTTAAGATATGAAGGAGCCAGAGGATTACTTAAGGGTTTAGTGCCTACTTTATCAAGGGATGTGCCTGGAAACGCCATTGCGTTCGGTGTGTATGAAGCTCTGAAGCAGTTGATGGCAGGAGGGCGTGATACATCTCAATTGGGCATGGGTGCCCTGCTTACTTCTGGTGGGATTGCTGGCGCTGCTTGCTGGGCACTTATCTATCCAACTGATGTTGTGAAGAGTGTCATCCAGATTGATGAATTTCACCAGCCAAAGTATGCTGGTTCAATTGATGCATTCAAGAAAATAGTCACTTCAGAAGGGTTTAAGGGCTTGTATAAAGGATTTGGTCCAGCCATATTAAGAAGTGTTCCTGCCAATGCGACATGCTTCCTTGCTTACGAGTTTACCAGGTCAATCTTGGGATGA___TGAGAAATTCTAATCAAATCCTGTTCTATTGTGAGAAT

Fln Alignment:

AllPineV4_rep_c89611___TGVATSMNLNGPIDVAKHVLRYEG-ARGLLKGLVPTLSRDVPGNAIAFGVYEALKQLMAGGRDTSQLGMGALLTSGGIAGAACWALIYPTDVVKSVIQIDEFHQPKYAGSIDAFKKIVTSEGFKGLYKGFGPAILRSVPANATCFLAYEFTRSILG
B8LPX0_______________TGVAASIKYSGPLDVAKHVLKSEGGARGLFKGLVPTLSREVPGNAAMFGVYEGVKQFMAGGRDTSQLGRGALLTSGGIAGAAFWLFVYPTDVVKSVIQVDDFRQPKYSGTIDAFRKIAASEGVKGLYKGFGPAMVRSVPANAACFLAYEVTKSSLG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain