SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene66245

Length: 673 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene66245 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Whole genome shotgun sequence of line PN40024, scaffold_26.assembly12x (Fragment) n=2 Tax=Vitis vinifera RepID=D7TNL0_VITVI	-	-	78%
FL-Next	sp=Chaperone protein dnaJ 16; Arabidopsis thaliana (Mouse-ear cress).	-	-	74%
Blast2go	altered response to gravity	-	-	87%

Source	GOs	Term	Type	Identity
Blast2go	response to cadmium ion	GO:0046686	Biological Process	87%
Blast2go	protein binding	GO:0005515	Molecular Function	87%
Blast2go	Golgi stack	GO:0005795	Cellular Component	87%
Blast2go	plasma membrane	GO:0005886	Cellular Component	87%

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein DnaJ, N-terminal	IPR001623	-	-
Sma3	Heat shock protein DnaJ	IPR003095	-	-
Sma3		IPR015609	-	-
Sma3	Heat shock protein DnaJ, conserved site	IPR018253	-	-

Full-Lengther Next Prediction

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
347	33		66		0.997459
348	33			66	0.997458
349		66		33	0.997458
350		66	33		0.997457
351	66			33	0.997457
580			33	66	0.997453
582	33	66			0.997454
584		66		33	0.997461

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain