SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene65854

Length: 285 nt

Origin of reads: Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene65854
GCTGCTCAATTGTCCCATCAGTACATCAGTGATCGTTTCCTTCCCGATAAGGCAATTGATCGTGACCTTGACTGAGGCTGGTTCTCGAGTGAGATTGAGGCATGCACAGCTTCCCGAGGAGGCCAGAGAGCTTGAAAAAGAACTTAGACAAATAACAAAAGAAAAGAATGAAGCTGTTCGAAGCCAGGACTTTGAAAAGGCTGGAGAGCTACGTGACCGGGAGATGGAGTTGAAGGCACAAATTGTTGCTATAACAGAGAAGGGTAAAGAAAAATCAAAAACATT

Ace file of the UniGene sp_v2.0_unigene65854 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP-dependent Clp protease ATP-binding subunit clpA homolog CD4A, chloroplastic n=1 Tax=Solanum lycopersicum RepID=CLPAA_SOLLC	-	-	5.0e-33	87%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%
Blast2go	atp-dependent protease	-	-	3.89307e-34	92%

Source	InterPros	Term	Type	Identity
Sma3	Chaperonin ClpA/B	IPR001270	-	-
Sma3	UVR domain	IPR001943	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	Clp, N-terminal	IPR004176	-	-
Sma3	ATPase, AAA-2	IPR013093	-	-
Sma3	Chaperonin ClpA/B, conserved site	IPR018368	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWX0

Fln msg: atg_distance in limit (1-15): atg_distance = 16, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 45 - 98

Fln protein: GMHSFPRRPESLKKNLDK*QKKRMKLFEARTLKRLESYVTGRWS*

Protein Length: 46

Fln nts: GCTGCTCAATTGTCCCATCAGTACATCAGTGATCGTTTCCTTCCCGATAAGGCAATTGATCGTGACCTTGACTGAGGCTGGTTCTCGAGTGAGATTGAGGC_-_ATGCACAGCTTCCCGAGGAGGCCAGAGAGCTTGAAAAAGAACTTAGACAAATAACAAAAGAAAAGAATGAAGCTGTTCGAAGCCAGGACTTTGAAAAGGCTGGAGAGCTACGTGACCGGGAGATGGAGTTGAAGGCACAAATTGTTGCTATAACAGAGAAGGGTAAAGAAAAATCAAAAACATT

Fln Alignment:

AllPineV4_rep_c88376___LRLVLE*D*GMHSFPRRPESLKKNLDK*QKKRMKLFEARTLKRLESYVTGRWS*RHKLLL
A9NWX0_______________MRLVLEYAFAMHSFLKKPENLTKNSDRLQKKRMNLFEARTLKRLESYVIVRWNLRHKFQL

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
22		75		25	0.996474
23		75	25		0.996474
24		75		25	0.996474
132			20	80	0.995494
205		60		40	1.0
206		60	40		1.0
209		60		40	1.0
210		60	40		1.0
211	40			60	1.0
215		40		60	1.0
229	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain