SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene65743

Length: 509 nt

Origin of reads: Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene65743
CGTCGTGACCTTGGCTGTCACTCAATTCTATTGCAGACCTGCAAATGGCAACAAATAGTTTTAGTCAAGATAATCTTATTGCGGAGGGTGCTCTTGGACGAATCTACCGAGCAGAGTTTCCAGATGGAAAGATTTTGGCAGTGAAAAAATTGGACACTTCTACGCTGTCCCTACAAAGGCCTGAAGACTTCCTGGACGCAGTATCTAATATATCGCGCCTACATCATCCTAACATTACAGAACTAGTGGGTTATTGCACAGAACATGAGCAATACCTTCTTGTGTATGAATATTTCGACAATGGATCACTCTATGACGTATTGCACATGGCAGATGAGACTACTAGAAATTTGTCTTGGAACATTCGTGTAAAGATTGCGCTGGGTTCAGCTCGAGTTTTAGAGTTCAGGTGCTGGGTTCATTTGGGTACAGTGCTCCTGAATATACATGTCAGGAATCTATACAATGAAGAGCGATGTGTATAGTTTTGGAGTGGTAATGCTTGAGTC

Ace file of the UniGene sp_v2.0_unigene65743 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ovule receptor-like kinase 28 [Solanum chacoense]	-	-	1.4013e-45	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	38%
Blast2go	protein	-	-	0.0	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	81%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LM41

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 168 aas, your sequence is shorter than subject: 161 - 613

Fln protein: S*PWLSLNSIADLQMATNSFSQDNLIAEGALGRIYRAEFPDGKILAVKKLDTSTLSLQRPEDFLDAVSNISRLHHPNITELVGYCTEHEQYLLVYEYFDNGSLYDVLHMADETTRNLSWNIRVKIALGSARVLEFRCWVHLGTVLLNIHVRNLYNEERCV*

Protein Length: 162

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTCTATTGCAGACCTGCAAATGGCAACAAATAGTTTTAGTCAAGATAATCTTATTGCGGAGGGTGCTCTTGGACGAATCTACCGAGCAGAGTTTCCAGATGGAAAGATTTTGGCAGTGAAAAAATTGGACACTTCTACGCTGTCCCTACAAAGGCCTGAAGACTTCCTGGACGCAGTATCTAATATATCGCGCCTACATCATCCTAACATTACAGAACTAGTGGGTTATTGCACAGAACATGAGCAATACCTTCTTGTGTATGAATATTTCGACAATGGATCACTCTATGACGTATTGCACATGGCAGATGAGACTACTAGAAATTTGTCTTGGAACATTCGTGTAAAGATTGCGCTGGGTTCAGCTCGAGTTTTAGAGTTCAGGTGCTGGGTTCATTTGGGTACAGTGCTCCTGAATATACATGTCAGGAATCTATACAATGAAGAGCGATGTGTATAGTTTTGGAGTGGTAATGCTTGAGTC

Fln Alignment:

AllPineV4_rep_c88066___IADLQMATNSFSQDNLIAEGALGRIYRAEFPDGKILAVKKLDTSTLSLQRPEDFLDAVSNISRLHHPNITELVGYCTEHEQYLLVYEYFDNGSLYDVLHMADETTRNLSWNIRVKIALGSARVLEFRCWVH
B8LM41_______________LSDLMAATNDFSPENIIGSGRTGTVYRATLTDGSVMAIKRLRDSA---QSEKQFKAEMNTLARLRHRNLVPLLGYCIAGQEKLLVYKHMANGSLWDCLQSKENPANNLDWTARLKIGIGGARGM---AWLH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain