SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene65540

Length: 372 nt

Origin of reads: Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene65540
TGCTCCTACAGATTTGAGTCCGATGAGTTTTTCGACTGAGTCATCGGATGAGACGCATGATGATAATAATATTTCAGAGACTCGGAGCAGCAGAAAAGGAAGCGGATTACCACCAAGAAAATGATGAGATTTGTCGAGAGACTGATGGAAAGAGTCATGGAGAAGCAAGAAATGATGCAGCAGAGATTTCTTGAAATGATCGATAAGCGCGAGCAGGATAGGATGATCCGTGAAGAAGCTTGGAGGCGGCAAGAAAATGTCAGGTTGAGTAGAGAAAGCGAACTGAGGTCGCAGGAACGAGCTCTCACCGCATCAAGAGATAGAGCACTAATTGCCTTTCTCCAAAAATGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene sp_v2.0_unigene65540 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	MAP7 domain containing protein	-	-	0.0001	42%
FL-Next	sp=Trihelix transcription factor GTL1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	59%
Blast2go	protein	-	-	2.69092e-25	83%

Source	InterPros	Term	Type	Identity
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	MADF domain	IPR006578	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	Myb-like domain	IPR017877	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9C882

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 238 aas, your sequence is shorter than subject: 117 - 587

Fln protein: CSYRFESDEFFD*VIG*DA****YFRDSEQQKRKRITTKKMMRFVERLMERVMEKQEMMQQRFLEMIDKREQDRMIREEAWRRQENVRLSRESELRSQERALTASRDRALIAFLQK*

Protein Length: 118

Fln nts: TGCTCCTACAGATTTGAGTCCGATGAGTTTTTCGACTGAGTCATCGGATGAGACGCATGATGATAATAATATTTCAGAGACTCGGAGCAGCAGAAAAGGAAGCGGATTACCACCAAGAAAATGATGAGATTTGTCGAGAGACTGATGGAAAGAGTCATGGAGAAGCAAGAAATGATGCAGCAGAGATTTCTTGAAATGATCGATAAGCGCGAGCAGGATAGGATGATCCGTGAAGAAGCTTGGAGGCGGCAAGAAAATGTCAGGTTGAGTAGAGAAAGCGAACTGAGGTCGCAGGAACGAGCTCTCACCGCATCAAGAGATAGAGCACTAATTGCCTTTCTCCAAAAATGAGTGACAGCCAAGGTCACGACG

Fln Alignment:

AllPineV4_rep_c87479___ERLMERVMEKQEMMQQRFLEMIDKREQDRMIREEAWRRQENVRLSRESELRSQERALTASRDRALIAFLQK
Q9C882_______________EGLVRQVMQKQAAMQRSFLEALEKREQERLDREEAWKRQEMARLAREHEVMSQERAASASRDAAIISLIQK

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain