SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene65514

Length: 349 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene65514
CGTCGTGACCTTGGCTGTCACTCAATTAGGGAAAAAAATGGATGTCATTGACTTGGAAGATGAAACTATTGATGCGGAAGTTCTGAATTCTATGGCTGTTACAAATGAGCACTTTCAGGCTGCACTGGGCTCTAGTAACCCTTCTGCCCTGCGTGAGACTGTTGTGGAGGTGCCAAATGTTTCTTGGGAGGATATTGGGGGTCTGGAAAATGTCAAAAGAGAGCTTCAGGAGGTAAAACCTTTAACCGTGTATTCCTTTCACAATTTTAGTCTAGTTTGTCAAAGGCTGGCTACCGTATTCTAGAAGTTTGATTGATGATGTTTCCTTGATCGTTGGCAGACTGTGCAA

Ace file of the UniGene sp_v2.0_unigene65514

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=Cell division cycle protein 48 homolog; AltName: Full=Valosin-containing protein homolog; Short=VCP gb\|AAA80587.1\| valosin-containing protein [Glycine max] gb\|ABC87759.1\| plamsma membrane-associated AAA-ATPase [Glycine max]	-	-	4.0e-29	89%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	47%
Blast2go	cell division cycle protein 48 homolog	-	-	9.82133e-34	93%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	CDC48, N-terminal subdomain	IPR003338	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	CDC48, domain 2	IPR004201	-	-
Sma3	ATPase, AAA-type, CDC48	IPR005938	-	-
Sma3	Aspartate decarboxylase-like fold	IPR009010	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Vps4 oligomerisation, C-terminal	IPR015415	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NVV9

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 223 aas, your sequence is shorter than subject: 101 - 416

Fln protein: VVTLAVTQLGKKMDVIDLEDETIDAEVLNSMAVTNEHFQAALGSSNPSALRETVVEVPNVSWEDIGGLENVKRELQEVKPLTVYSFHNFSLVCQRLATVF*

Protein Length: 102

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTAGGGAAAAAAATGGATGTCATTGACTTGGAAGATGAAACTATTGATGCGGAAGTTCTGAATTCTATGGCTGTTACAAATGAGCACTTTCAGGCTGCACTGGGCTCTAGTAACCCTTCTGCCCTGCGTGAGACTGTTGTGGAGGTGCCAAATGTTTCTTGGGAGGATATTGGGGGTCTGGAAAATGTCAAAAGAGAGCTTCAGGAGGTAAAACCTTTAACCGTGTATTCCTTTCACAATTTTAGTCTAGTTTGTCAAAGGCTGGCTACCGTATTCTAGAAGTTTGATTGATGATGTTTCCTTGATCGTTGGCAGACTGTGCAA

Fln Alignment:

AllPineV4_rep_c87403___AVTNEHFQAALGSSNPSALRETVVEVPNVSWEDIGGLENVKRELQE
A9NVV9_______________SITMEDWEVARSKVGPSIVRGVIAEVPKVSWEDIGGLHDVKKKLQQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain