SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene65467

Length: 356 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

>sp_v2.0_unigene65467
CGTCGTGACCTTGGCTGTCACTCAATCTCAAACTGGAGAGAATCCCTTCTGATACTGAAATTAGAGTAATTCAGCAGTCACTCCAAGCATTGCCAGGAGTAGAAGATACAGAAGTGGATGTACAACTAGAGAAAATAACCGTGTCATACAATCCAGATTTGACTGGACCCAGAACATTCATCGATGTGATTGGGGAGACATATCCTGGACACTGTACGGCAACTTTATTTTAGCCTGGAGGACTAGGAGGACCGGACAGAAGTGAAGAGATTAAGCAATACTACAAGTCTTTTCTATGGAGTTTGGCTTTCACTGTACCAGTATTTCTCCTAGCCATGGTTTTTATGTACACTCCA

Ace file of the UniGene sp_v2.0_unigene65467

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Heavy metal ATPase n=1 Tax=Populus trichocarpa RepID=B9GKJ2_POPTR	-	-	7.0e-28	53%
FL-Next	sp=Putative copper-transporting ATPase 3; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	54%
Blast2go	heavy metal p-type atpase	-	-	3.33079e-32	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	detoxification of copper ion	GO:0010273	Biological Process	3.33079e-32	69%
Blast2go	catalytic activity	GO:0003824	Molecular Function	3.33079e-32	69%

Source	InterPros	Term	Type	Identity
Sma3		IPR001756	-	-
Sma3	ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter	IPR001757	-	-
Sma3		IPR001877	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	Heavy metal-associated domain, HMA	IPR006121	-	-
Sma3	Heavy metal-associated domain, copper ion-binding	IPR006122	-	-
Sma3	ATPase, P type, cation/copper-transporter	IPR006403	-	-
Sma3	ATPase, P-type, heavy metal translocating	IPR006416	-	-
Sma3	ATPase, P-type, ATPase-associated domain	IPR008250	-	-
Sma3	Heavy-metal-associated, conserved site	IPR017969	-	-
Sma3	ATPase, P-type phosphorylation site	IPR018303	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9SH30

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 674 aas, your sequence is shorter than subject: 118 - 995

Fln protein: S*PWLSLNLKLERIPSDTEIRVIQQSLQALPGVEDTEVDVQLEKITVSYNPDLTGPRTFIDVIGETYPGHCTATLF*PGGLGGPDRSEEIKQYYKSFLWSLAFTVPVFLLAMVFMYTP

Protein Length: 119

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCTCAAACTGGAGAGAATCCCTTCTGATACTGAAATTAGAGTAATTCAGCAGTCACTCCAAGCATTGCCAGGAGTAGAAGATACAGAAGTGGATGTACAACTAGAGAAAATAACCGTGTCATACAATCCAGATTTGACTGGACCCAGAACATTCATCGATGTGATTGGGGAGACATATCCTGGACACTGTACGGCAACTTTATTTTAGCCTGGAGGACTAGGAGGACCGGACAGAAGTGAAGAGATTAAGCAATACTACAAGTCTTTTCTATGGAGTTTGGCTTTCACTGTACCAGTATTTCTCCTAGCCATGGTTTTTATGTACACTCCA

Fln Alignment:

AllPineV4_rep_c87262___LNLKLERIPSDTEIRVIQQSLQALPGVEDTEVDVQLEKITVSYNPDLTGPRTFIDVIGET---YPGHCTATLF*PGGLGGPDRSE-EIKQYYKSFLWSLAFTVPVFLLAMVFMYTP
Q9SH30_______________IDLKIDGELTDESMKVIERSLEALPGVQSVEISHGTDKISVLYKPDVTGPRNFIQVIESTVFGHSGHIKATIFSEGGVGRESQKQGEIKQYYKSFLWSLVFTVPVFLTAMVFMYIP

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
282	66		33		0.997467
283		66	33		0.997461
284			33	66	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain