SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene65419

Length: 367 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene65419
CGTCGTGACCTTGGCTGTCACTCAGGTTTAGTCGATGAAGGGCTTCAGCTCTTTGATTCAATGTGTCAAGATTATTGTATTGCTCCAAGAGAAGTTCATTATGCCTGCATGATTGACCTCCTTGGCCGGGCTGGGCGCCTAGATGAGGCCAGGGACTTCATGAAAAGCATTCCATTTGCACCTGATGCAAATGTGTGGGGAGCATTACTTGGTGCCTGCCGAATGTATGGCAACATTGATCTAGGAAAATATGCGGCAGAATGCCTTTTTCAGTTGGAACCACAGAATGCCGCTAAATATGTGCTGCTCTCGAACATCTATGCTTCAGCTGGCAGGTGGGATGATGTAGCAAAGGTGAGAAGACATT

Ace file of the UniGene sp_v2.0_unigene65419

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|Q9SY02.1\|PP301_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g02750 gb\|AAD15348.1\| hypothetical protein [Arabidopsis thaliana] emb\|CAB77760.1\| hypothetical protein	-	-	6.0e-35	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Blast2go	pentatricopeptide repeat-containing protein	-	-	0.0	78%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Armadillo	IPR000225	-	-
Sma3	Serine/threonine dehydratase, pyridoxal-phosphate-binding site	IPR000634	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Mannose-binding lectin	IPR001229	-	-
Sma3	Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1	IPR001578	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Domain of unknown function DUF659	IPR007021	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3		IPR011523	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Methyltransferase type 11	IPR013216	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAE0

Fln msg: Distance to subject end: 144 aas, your sequence is shorter than subject: 102 - 246

Fln protein: MCQDYCIAPREVHYACMIDLLGRAGRLDEARDFMKSIPFAPDANVWGALLGACRMYGNIDLGKYAAECLFQLEPQNAAKYVLLSNIYASAGRWDDVAKVRRH

Protein Length: 103

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTTTAGTCGATGAAGGGCTTCAGCTCTTTGATTCA_-_ATGTGTCAAGATTATTGTATTGCTCCAAGAGAAGTTCATTATGCCTGCATGATTGACCTCCTTGGCCGGGCTGGGCGCCTAGATGAGGCCAGGGACTTCATGAAAAGCATTCCATTTGCACCTGATGCAAATGTGTGGGGAGCATTACTTGGTGCCTGCCGAATGTATGGCAACATTGATCTAGGAAAATATGCGGCAGAATGCCTTTTTCAGTTGGAACCACAGAATGCCGCTAAATATGTGCTGCTCTCGAACATCTATGCTTCAGCTGGCAGGTGGGATGATGTAGCAAAGGTGAGAAGACATT

Fln Alignment:

AllPineV4_rep_c87109___MCQDYCIAPREVHYACMIDLLGRAGRLDEARDFMKSIPFAPDANVWGALLGACRMYGNIDLGKYAAECLFQLEPQNAAKYVLLSNIYASAGRWDDVAKVRR
D5AAE0_______________MCRDYCIAPREVHYACMIDLLGRAGRLDEARDFMKTIPFAPDANVWGALLGACRMYGNIDLGKHAAECLFQLEPHNAAKYVLLSNIYAAAGRWDDVAKVRK

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
36		33		66	0.997453
51		66	33		0.997461
157	33	66			0.997454
164	75			25	0.996473
165	75	25			0.996473
313	33		66		0.997454
334		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain