SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene65391

Length: 316 nt

Origin of reads: Biogeco1 v2

UniGene Fasta

>sp_v2.0_unigene65391
AATGTCATGTTCTTAGAGGGATTGTCAATGGTAACAGAGAGAAAAGGGTCATCAATGACATAATTAAAGAAGTTGATGATAATATTAAAGCGGGAACCCTGCTGGACAATTTCAAGATGAGCGGGCTTCCTTTGCTGTACAACAAGTTTGTGGAGCTTGTAGATTATCTGTTGAAAAATGATGCTGAACAAACCGCGAAAGACAAAGTTATTCTCCTTCTTCAAGATATGCTAGAGGTGGTTACTGAAGATATTATGATAGATGGCTATAGGATTGTGGATTCAGTGCAAGAAGAGGTAACCACAAATGAATGAAG

Ace file of the UniGene sp_v2.0_unigene65391

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Callose synthase n=1 Tax=Arabidopsis thaliana RepID=F4K116_ARATH	-	-	2.0e-17	51%
FL-Next	sp=Callose synthase 3; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	51%
Blast2go	callose synthase	-	-	1.46836e-20	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	(1->3)-beta-D-glucan biosynthetic process	GO:0006075	Biological Process	1.46836e-20	69%
Blast2go	pollen wall assembly	GO:0010208	Biological Process	1.46836e-20	69%
Blast2go	microsporogenesis	GO:0009556	Biological Process	1.46836e-20	69%
Blast2go	regulation of pollen tube growth	GO:0080092	Biological Process	1.46836e-20	69%
Blast2go	pollen germination	GO:0009846	Biological Process	1.46836e-20	69%
Blast2go	plasma membrane	GO:0005886	Cellular Component	1.46836e-20	69%

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycosyl transferase, family 48	IPR003440	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LXT9

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 956 aas, your sequence is shorter than subject: 104 - 1964

Fln protein: CHVLRGIVNGNREKRVINDIIKEVDDNIKAGTLLDNFKMSGLPLLYNKFVELVDYLLKNDAEQTAKDKVILLLQDMLEVVTEDIMIDGYRIVDSVQEEVTTNE*

Protein Length: 105

Fln nts: AATGTCATGTTCTTAGAGGGATTGTCAATGGTAACAGAGAGAAAAGGGTCATCAATGACATAATTAAAGAAGTTGATGATAATATTAAAGCGGGAACCCTGCTGGACAATTTCAAGATGAGCGGGCTTCCTTTGCTGTACAACAAGTTTGTGGAGCTTGTAGATTATCTGTTGAAAAATGATGCTGAACAAACCGCGAAAGACAAAGTTATTCTCCTTCTTCAAGATATGCTAGAGGTGGTTACTGAAGATATTATGATAGATGGCTATAGGATTGTGGATTCAGTGCAAGAAGAGGTAACCACAAATGAATGAAG

Fln Alignment:

AllPineV4_rep_c87027___HVLRGIVNGNREKRVINDIIKEVDDNIKAGTLLDNFKMSGLPLLYNKFVELVDYLLKNDAEQTAKDKVILLLQDMLEVVTEDIMIDGYRI
Q9LXT9_______________NIIKFVVQGNREKEVIEIIFAEVDKHIDTGDLIQEYKMSALPSLYDHFVKLIKYLLDNKEED--RDHVVILFQDMLEVVTRDIMMEDYNI

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
175	75			25	0.996473
176	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain