SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene65349

Length: 341 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene65349
CGTCGTGACCTTGGCTGTCACTCAATCTTCTGATGATAGTAGTGGCTGTTCCGATGTATGCCGAAGCTATTGATATTGGAGCTTTAACAGAGCTGCAAATACATGCAATGAATAGGAGGCTTCTGCAGAGCATAGATTGTAATGCGGCCTGCGGAGAAAGATGCAAAGAAGCTTCCCGCCAGAATGTATGTTTAAGAGCTTGTGGTACATGCTGTGCCAAGTGCAACTGTGTTCCTCCTGGTACATATGGAAACCAGGATCTCTGCGCATGTTATGCCAGCATGAAGACACGTGACAACAAACCTAAGTGCCCTTGAGTATTCTATATCCAGTACTGCAAC

Ace file of the UniGene sp_v2.0_unigene65349

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam02704, GASA, Gibberellin regulated protein	-	-	4.0e-32	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%
Blast2go	gibberellin-regulated protein	-	-	0.0	74%

Source	InterPros	Term	Type	Identity
Sma3	Gibberellin regulated protein	IPR003854	-	-
Sma3	Pistil-specific extensin-like protein	IPR003882	-	-
Sma3	Glycine rich protein	IPR010800	-	-
Sma3	Gonadotropin, beta subunit, conserved site	IPR018245	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NKH2

Fln msg: atg_distance in limit (1-15): atg_distance = 4, Unexpected STOP codon in 5 prime region,

Fln protein: MIVVAVPMYAEAIDIGALTELQIHAMNRRLLQSIDCNAACGERCKEASRQNVCLRACGTCCAKCNCVPPGTYGNQDLCACYASMKTRDNKPKCP*

Protein Length: 96

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCTTCTG_-_ATGATAGTAGTGGCTGTTCCGATGTATGCCGAAGCTATTGATATTGGAGCTTTAACAGAGCTGCAAATACATGCAATGAATAGGAGGCTTCTGCAGAGCATAGATTGTAATGCGGCCTGCGGAGAAAGATGCAAAGAAGCTTCCCGCCAGAATGTATGTTTAAGAGCTTGTGGTACATGCTGTGCCAAGTGCAACTGTGTTCCTCCTGGTACATATGGAAACCAGGATCTCTGCGCATGTTATGCCAGCATGAAGACACGTGACAACAAACCTAAGTGCCCTTGAGTATTCTATATCCAGTACTGCAAC

Fln Alignment:

AllPineV4_rep_c86892___LNLLMIVVAVPMYAEAIDIGALTE--LQIHAMNRRLLQSIDCNAACGERCKEASRQNVCLRACGTCCAKCNCVPPGTYGNQDLCACYASMKTRDNKPKCP
A9NKH2_______________LYFVMMVFVVQMYLEAADVGASTAAGLQTNGMNRSLLQTIDCNAACGQRCKEASRHKVCLRACGTCCAKCNCVPPGTSGNKDVCPCYASLKTHGNKPKCP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain