SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene65290

Length: 496 nt

Origin of reads: Inia v1 Biogeco1 v2 Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene65290
CGTCGTGACCTTGGCTGTCACTCAAAAAGAAACCTTGAACATTCTTAACGAGATACAGAGCAAGGACCAGAAAGGGAAAATGCAGGTGGTGAAGTCGGGAATTCGAGCCTTGGTCTCTCGCCCATGGGCACACACATGGAAATCCACTTTAACATATGCGTCCATGTACTCCTTGAGGGCAGCAGAAGCCAGAGATCTGTATGGCAGACATGCCCATGAACGTTCATTGCTGAGGGGACATCTTGTTCCGGGAAGAAAGGAGTATACCCAGTTGGCTTATCCCCTGCAACTTATCTGGACAAGCAGGAGGTCATAAGCAGGGTTCTCGAAGTCTTCAAATCTTTCCCTCAAGTCGAGCCTTCAAAGGTCGGACCATCAGCTCATTTCGAGAAAGATCTGAGGCTAGATATTCTGGATTCTGTGGGTGAGTGAATTTCTGAAACTTTCAAAAATCCTGAGCTGTATGGTTCAATTGGTGGATATGGCTCCCTACGAA

Ace file of the UniGene sp_v2.0_unigene65290 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Acyl carrier protein n=1 Tax=Picea sitchensis RepID=A9NKH5_PICSI	-	-	2.0e-25	85%
FL-Next	sp=Acyl carrier protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Blast2go	acyl carrier protein	-	-	6.60438e-32	78%

Source	InterPros	Term	Type	Identity
Sma3	Acyl carrier protein (ACP)	IPR003231	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Phosphopantetheine-binding	IPR006163	-	-
Sma3	Acyl carrier protein-like	IPR009081	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NKH5

Fln msg: Overlapping hits, possible frame ERROR between 280 and 250, query STOP codon too far from subject stop. Distance to subject end: 36 aas, putative chimeric sequence, your sequence is shorter than subject: 118 - 154

Fln protein: MQVVKSGIRALVSRPWAHTWKSTLTYASMYSLRAAEARDLYGRHAHERSLLRGHLVxxxxxxxxxxxxPATYLDKQEVISRVLEVFKSFPQVEPSKVGPSAHFEKDLRLDILDSVGE*

Protein Length: 119

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAAAGAAACCTTGAACATTCTTAACGAGATACAGAGCAAGGACCAGAAAGGGAAA_-_ATGCAGGTGGTGAAGTCGGGAATTCGAGCCTTGGTCTCTCGCCCATGGGCACACACATGGAAATCCACTTTAACATATGCGTCCATGTACTCCTTGAGGGCAGCAGAAGCCAGAGATCTGTATGGCAGACATGCCCATGAACGTTCATTGCTGAGGGGACATCTTGTTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCCTGCAACTTATCTGGACAAGCAGGAGGTCATAAGCAGGGTTCTCGAAGTCTTCAAATCTTTCCCTCAAGTCGAGCCTTCAAAGGTCGGACCATCAGCTCATTTCGAGAAAGATCTGAGGCTAGATATTCTGGATTCTGTGGGTGAGTGA___ATTTCTGAAACTTTCAAAAATCCTGAGCTGTATGGTTCAATTGGTGGATATGGCTCCCTACGAA

Fln Alignment:

AllPineV4_rep_c86674___MQVVKSGIRALVSRPWAHTWKSTLTYASMYSLRAAEARDLYGRHAHERSLLRGHLVPxxxxxxxxxxSPATYLDKQEVISRVLEVFKSFPQVEPSKVGPSAHFEKDLRLDILDSV
A9NKH5_______________MQVVKPGIRALVSRPWAHTWKSTITYAPMYSSRAAETRDLYGRYAHEGSLLRGFLILxxxxxxxxxxSPATYLNKQEVISRVLEVFKSCPQVELSKVGPSAHFEKDLRLDILDSV

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
415	66		33		0.997452
416	33	66			0.997452
417		66	33		0.997452
423			33	66	0.997458
424		33		66	0.997458
425		33		66	0.997458
426	33			66	0.997458
427	33	66			0.997452
428		66	33		0.997452
429		66	33		0.997452
431		33		66	0.997453
432	33	33		33	0.99775
434		33	33	33	0.997752
435	33			33	0.997752
436		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain