SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene65236

Length: 413 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene65236
GATGTGGATGGCAAGCGTTGGGCGCCTATGTAAATCTTGGGGCATACTATGTGCTTGGCATTCCTGTAGCTGCCATTTTGGCCTTTGTACTTCATGTTGGTGGCAGGGGACTTTGGCTTGGACTTGTTTGTGGACTATCCGTACAAACAATTATATTGTTTATAATAACGTTTTGTACGAATTGGGAAGAGCAGGCAGAAAAGGCCAGAGAAAGAGTTTATGCATCAGCATCGCCAACGTTACTGGTAATTTAATAGAGGACGAGCAATAAAATTTTAGGCCTGGATTGTTGGACTCAATGTTCAAACTCTTGTAACATACAAGGGAAAATGTTGGCTGCTTTCAAATACCTTAAAAGTGTGCCGCAGCTGCTTCACATCTGCAGCGTTAAAAGTCATTTGTGAGTGTTTTTT

Ace file of the UniGene sp_v2.0_unigene65236

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[V] COG0534 Na+-driven multidrug efflux pump	-	-	1.0e-07	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	51%
Blast2go	ripening regulated protein	-	-	3.59937e-29	80%

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Ribulose bisphosphate carboxylase, large subunit, C-terminal	IPR000685	-	-
Sma3	Multi antimicrobial extrusion protein	IPR002528	-	-
Sma3		IPR015521	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NV31

Fln msg: your sequence is shorter than subject: 84 - 513

Fln protein: CGWQALGAYVNLGAYYVLGIPVAAILAFVLHVGGRGLWLGLVCGLSVQTIILFIITFCTNWEEQAEKARERVYASASPTLLVI*

Protein Length: 85

Fln nts: GATGTGGATGGCAAGCGTTGGGCGCCTATGTAAATCTTGGGGCATACTATGTGCTTGGCATTCCTGTAGCTGCCATTTTGGCCTTTGTACTTCATGTTGGTGGCAGGGGACTTTGGCTTGGACTTGTTTGTGGACTATCCGTACAAACAATTATATTGTTTATAATAACGTTTTGTACGAATTGGGAAGAGCAGGCAGAAAAGGCCAGAGAAAGAGTTTATGCATCAGCATCGCCAACGTTACTGGTAATTTAA___TAGAGGACGAGCAATAAAATTTTAGGCCTGGATTGTTGGACTCAATGTTCAAACTCTTGTAACATACAAGGGAAAATGTTGGCTGCTTTCAAATACCTTAAAAGTGTGCCGCAGCTGCTTCACATCTGCAGCGTTAAAAGTCATTTGTGAGTGTTTTTT

Fln Alignment:

AllPineV4_rep_c86495___CGWQALGAYVNLGAYYVLGIPVAAILAFVLHVGGRGLWLGLVCGLSVQTIILFIITFCTNWEEQAEKARERV
A9NV31_______________CGWQALVAYINVGCYYIIGIPVGCLLGFKFGFGVKGIWLGMLGGTCLQTIILIVITYKTDWKKEVEKASQRL

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
84			33	66	0.997452
86		33		66	0.997452
96		66	33		0.997452
97	66	33			0.997452
101		33		66	0.997452
102	33		66		0.997454
103		33	66		0.997455

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain