SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene65215

Length: 499 nt

UniGene Fasta

>sp_v2.0_unigene65215
AATGTCCTTGCACCTAACCTGGAACATTATGCATGCTTGGTTGACCTTCTTGGGCGTGCAGGGCATCTAGATGAAGCACATGACACTATCAAAAAGATGCCATTAGAGCCTAGTCCAAATGTGTGGGGAGCCTTGCTTGGTGCCTGCAGAATTCACTGCAATATTGAGCTTGGAGAACAAGCAGCAAAACACCTCTTTGAATTAGAACCAACCAATGCTGGATATTATGTACTGTTGTCAAACATGTATGCTGAGGCACGCAGGTGGGAGGATGTAGTAAAGTTGAGGAATATGATGAAAGAGAGGGGAGTGAAGAAGCAACCAGGATGCAGTGCTGTTGCGGTACATAGAGAGGTTCATACATTCCTCGTGGGAGACAGAACACATCCTCAGTCTGAAAAAATTTATGCAATGTTGGAAATCTTGTATGGGCAAATGAGGAAGGCAGGTTATGTGCCTGACACAAATCTTGTTCTGCAGGATGGTGGATGAGGAGACT

Ace file of the UniGene sp_v2.0_unigene65215

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Blast2go	tetratricopeptide repeat-like family protein	-	-	76%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Armadillo	IPR000225	-	-
Sma3	Serine/threonine dehydratase, pyridoxal-phosphate-binding site	IPR000634	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Mannose-binding lectin	IPR001229	-	-
Sma3	BRCT domain	IPR001357	-	-
Sma3	Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1	IPR001578	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Domain of unknown function DUF659	IPR007021	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3		IPR011523	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Methyltransferase type 11	IPR013216	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQA8

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 76 aas, your sequence is shorter than subject: 164 - 795

Fln protein: NVLAPNLEHYACLVDLLGRAGHLDEAHDTIKKMPLEPSPNVWGALLGACRIHCNIELGEQAAKHLFELEPTNAGYYVLLSNMYAEARRWEDVVKLRNMMKERGVKKQPGCSAVAVHREVHTFLVGDRTHPQSEKIYAMLEILYGQMRKAGYVPDTNLVLQDGG*

Protein Length: 165

Fln nts: AATGTCCTTGCACCTAACCTGGAACATTATGCATGCTTGGTTGACCTTCTTGGGCGTGCAGGGCATCTAGATGAAGCACATGACACTATCAAAAAGATGCCATTAGAGCCTAGTCCAAATGTGTGGGGAGCCTTGCTTGGTGCCTGCAGAATTCACTGCAATATTGAGCTTGGAGAACAAGCAGCAAAACACCTCTTTGAATTAGAACCAACCAATGCTGGATATTATGTACTGTTGTCAAACATGTATGCTGAGGCACGCAGGTGGGAGGATGTAGTAAAGTTGAGGAATATGATGAAAGAGAGGGGAGTGAAGAAGCAACCAGGATGCAGTGCTGTTGCGGTACATAGAGAGGTTCATACATTCCTCGTGGGAGACAGAACACATCCTCAGTCTGAAAAAATTTATGCAATGTTGGAAATCTTGTATGGGCAAATGAGGAAGGCAGGTTATGTGCCTGACACAAATCTTGTTCTGCAGGATGGTGGATGAGGAGACT

Fln Alignment:

AllPineV4_rep_c86421___LAPNLEHYACLVDLLGRAGHLDEAHDTIKKMPLEPSPNVWGALLGACRIHCNIELGEQAAKHLFELEPTNAGYYVLLSNMYAEARRWEDVVKLRNMMKERGVKKQPGCSAVAVHREVHTFLVGDRTHPQSEKIYAMLEILYGQMRKAGYVPDTNLVLQD
B8LQA8_______________LAPKLEHYACLVDLLGRAGHLDEANGIIKNMSLEPDANVWGALLGACRIHCNIELGEQAAKHLFELDPDNAGYYVLLSNIYAEAQRWEDVAKLRKMMKEKGVKKQPGCSVVAVHRDVQTFLVGDRTHPQSEQIYAMLEILYEQMRKAGYVPNTNLALQD

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
195		66		33	0.997459

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain