SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene65137

Length: 531 nt

UniGene Fasta

>sp_v2.0_unigene65137
GAAGGTGTGGAATGCAGTAACTGGTCGAAAGCAGTACGCATTCTATGTTGCACGAAACTTCAAAGAACCCCGCGTTTCGAGCCGTACCCGTACCCGAAACTTGGCGGAAACTCGGCGGAAACTCGGCCATTATTACGCATTTGAAGGCCATGAAGTAGCTATATGTTCAGTTTGTCTTCACCGTAAGAAAATATTCAGCTATTGATTGAAAGATTAAAGCCTGGTTATATGATCTTGCCGAATCTTTCGGGCCTTATAGTGCTGATGGAACAAGGCTCTTCTCCTGTGGAACAAGTAAAGGTGGTGATTCATACCTGGTTGAGTGGAATGAAAGCGAGGGAACAATCCAACGGACATAATCTGATTTTAAGTGTTCCTTGGGTGTTGTGCAATTTGATACAACCAGTAATAGGTTGTTGGCAGCTGGTGATGAATTTCAAATAAAGTTCTGGGACATGAATAACACCAACATCCTGACAACAATTGATGTTGAGGGTAGTTCGGCTAGTCCCTGTTGGCAGTCACGACATA

Ace file of the UniGene sp_v2.0_unigene65137

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	Isoform 1 of Topless-related protein 1 OS=Arabidopsis thaliana GN=TPR1	-	-	0.0	57%
Blast2go	protein	-	-	5.31028e-40	70%

Source	InterPros	Term	Type	Identity
Sma3	Histidine phosphatase superfamily, clade-2	IPR000560	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	LisH dimerisation motif	IPR006594	-	-
Sma3	CTLH, C-terminal LisH motif	IPR006595	-	-
Sma3	LisH dimerisation motif, subgroup	IPR013720	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	F-box associated interaction domain	IPR017451	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Cytochrome b5, heme-binding site	IPR018506	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q0WV90-1

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 469 aas, your sequence is shorter than subject: 176 - 1119

Fln protein: RCGMQ*LVESSTHSMLHETSKNPAFRAVPVPETWRKLGGNSAIITHLKAMK*LYVQFVFTVRKYSAID*KIKAWLYDLAESFGPYSADGTRLFSCGTSKGGDSYLVEWNESEGTIQRT*SDFKCSLGVVQFDTTSNRLLAAGDEFQIKFWDMNNTNILTTIDVEGSSASPCWQSRH

Protein Length: 177

Fln nts: GAAGGTGTGGAATGCAGTAACTGGTCGAAAGCAGTACGCATTCTATGTTGCACGAAACTTCAAAGAACCCCGCGTTTCGAGCCGTACCCGTACCCGAAACTTGGCGGAAACTCGGCGGAAACTCGGCCATTATTACGCATTTGAAGGCCATGAAGTAGCTATATGTTCAGTTTGTCTTCACCGTAAGAAAATATTCAGCTATTGATTGAAAGATTAAAGCCTGGTTATATGATCTTGCCGAATCTTTCGGGCCTTATAGTGCTGATGGAACAAGGCTCTTCTCCTGTGGAACAAGTAAAGGTGGTGATTCATACCTGGTTGAGTGGAATGAAAGCGAGGGAACAATCCAACGGACATAATCTGATTTTAAGTGTTCCTTGGGTGTTGTGCAATTTGATACAACCAGTAATAGGTTGTTGGCAGCTGGTGATGAATTTCAAATAAAGTTCTGGGACATGAATAACACCAACATCCTGACAACAATTGATGTTGAGGGTAGTTCGGCTAGTCCCTGTTGGCAGTCACGACATA

Fln Alignment:

AllPineV4_rep_c86176___VQFVFTVRKYSAID*KIKAWLYDLAES------------FGPYSADGTRLFSCGTSKGGDSYLVEWNESEGTIQRT*SDF-KCSLGVVQFDTTSNRLLAAGDEFQIKFWDMNNTNILTTIDVEGS-SASP
Q0WV90-1_____________IQFIFS----TALDGKIKAWLYDNMGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFHKRSLGVVQFDTTKNRYLAAGDDFSIKFWDMDTIQLLTAIDADGGLQASP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain